| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,741,871 – 18,741,930 |
| Length | 59 |
| Max. P | 0.774089 |
| Location | 18,741,871 – 18,741,930 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 92.09 |
| Shannon entropy | 0.15612 |
| G+C content | 0.68556 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -23.45 |
| Energy contribution | -24.07 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18741871 59 - 23011544 AAGCGCCGCACUCUGGAGGACUCCGCGAUGCAUCGCAGCGGGUCUUUGGGGGCUGGGGC ....(((.((((((.((((((.((((..(((...))))))))))))).)))).)).))) ( -29.00, z-score = -2.29, R) >droAna3.scaffold_12916 8214496 59 - 16180835 AAGCGCCGCACUUUGGAGGACUCCCAGAUAUAUCGCAGCGGGUUUUCUGCGGCUGGGGC ....((((((.....(((((((((..((....))...).))))))))))))))...... ( -17.60, z-score = 0.51, R) >droEre2.scaffold_4845 17054390 58 + 22589142 AAGCGCCGCACUCUGGAGGACUCCGCGAUGCAACGCAGCGGGU-UUUCGGGGCUGGGGC ....(((.((..((.((((((.((((..(((...)))))))))-)))).))..)).))) ( -25.90, z-score = -1.62, R) >droYak2.chr2R 5255468 59 - 21139217 AAGCGCCGCACUCUGGAGGACUCCGCGCUGCAUCGCAGCGGGUCUCUCGGGGCUGGGGC ....(((.(((((((..((((.((((((......)).))))))))..))))).)).))) ( -30.70, z-score = -1.95, R) >droSec1.super_7 2363096 59 - 3727775 AAGCGCCGCACUCUGGAGGACUCCGCGAUGCAUCGCAGCGGGUCUUUGGGGGCUGGGGC ....(((.((((((.((((((.((((..(((...))))))))))))).)))).)).))) ( -29.00, z-score = -2.29, R) >droSim1.chr2L 18429341 59 - 22036055 AAGCGCCGCACUCUGGAGGACUCCGCGAUGCAUCGCAGCGGGUCUUUGGGGGCUGGGGC ....(((.((((((.((((((.((((..(((...))))))))))))).)))).)).))) ( -29.00, z-score = -2.29, R) >consensus AAGCGCCGCACUCUGGAGGACUCCGCGAUGCAUCGCAGCGGGUCUUUGGGGGCUGGGGC ....(((.((((((.((((((.((((..(((...))))))))))))).)))).)).))) (-23.45 = -24.07 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:31 2011