| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,780,335 – 1,780,435 |
| Length | 100 |
| Max. P | 0.851131 |
| Location | 1,780,335 – 1,780,435 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 80.52 |
| Shannon entropy | 0.36399 |
| G+C content | 0.38779 |
| Mean single sequence MFE | -13.33 |
| Consensus MFE | -7.38 |
| Energy contribution | -8.08 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.851131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1780335 100 - 23011544 AAUAAGUUACGCUUAGCAUUUUGUG-UUUUCCUUUCCGCAAAGUGCAUUUUUCACCUUUUAUCAUUAUUUCUUGGCUCAUUUUCCGAGCUUUUUCCCUACC ..((((.....))))((((((((((-..........))))))))))...........................(((((.......)))))........... ( -18.60, z-score = -4.20, R) >droSim1.chr2L 1768101 99 - 22036055 AAUAAGUUACGCUUAGCAUUUUCUG-UUUUCC-UUCCGCAAAGUGCAUUUUUCACCUUUUAUCAUUAUUUCUUGGCUCAUUUUCCGAGCUUUUUCCCUACC ..((((.....))))(((((((.((-......-...)).)))))))...........................(((((.......)))))........... ( -12.40, z-score = -1.88, R) >droSec1.super_14 1714657 89 - 2068291 AAUAAGUUUCGCUUAGCAUUUUCUG-UUUUCCUUUCCGCAGAGUGCAUUUUUCACCUUUUAUCAUUAUUUCUUGGCUCAUUUUCCCUACC----------- ..((((.....))))((((..((((-(..........)))))))))............................................----------- ( -9.20, z-score = -1.18, R) >droYak2.chr2L 1755728 101 - 22324452 AAUAAGUUGCGCUUAGCAUUUUCUGUUUUUCCUUUCCGCAAAGUGCAUUUUUCACCUUUUAUCAUUAUUUCUUGGCUCAUUUUCCGAGCUUUUUCCCUACC .......(((((((.((....................)).)))))))..........................(((((.......)))))........... ( -14.65, z-score = -2.19, R) >droEre2.scaffold_4929 1826760 100 - 26641161 AAUAAGUUACGCUUAGCAUUUUCUGUUUUUCCUUUCCGCAAAGUGCAUUUUUCACCUUUUAUCAUUAUUUCUUGGCUCAUUUUCCGAGC-UUUUCCCUACC ..((((.....))))(((((((.((...........)).)))))))...........................(((((.......))))-).......... ( -12.20, z-score = -1.81, R) >droAna3.scaffold_12916 376380 87 + 16180835 AAUAAGUUGCUCUUAGCGCCCUC---CUCCUCCCCCUGU-GAGUGCGUUUUUCGCCUCUCAUCAUUAUUUGUUGGCUCACCCUUCCCUCCA---------- ........((.....))(((..(---..........((.-(((.(((.....)))))).)).........)..)))...............---------- ( -12.91, z-score = -1.95, R) >consensus AAUAAGUUACGCUUAGCAUUUUCUG_UUUUCCUUUCCGCAAAGUGCAUUUUUCACCUUUUAUCAUUAUUUCUUGGCUCAUUUUCCGAGCUUUUUCCCUACC ..((((.....))))(((((((.................)))))))...........................(((((.......)))))........... ( -7.38 = -8.08 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:12 2011