| Sequence ID | dm3.chr2L |
|---|---|
| Location | 146,099 – 146,196 |
| Length | 97 |
| Max. P | 0.924264 |
| Location | 146,099 – 146,196 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 71.58 |
| Shannon entropy | 0.48818 |
| G+C content | 0.55000 |
| Mean single sequence MFE | -34.01 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.37 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 146099 97 - 23011544 CAUCUGCCCCAGGGUUUCGGAGGUACACUCCACAUUACGUGGGGCUUUUUC------UGGACACCGUUCGUUCUGCGGCUUCUGCUGCACUGACACGGCUCUG----------- .....((((((.(.....((((.....))))......).))))))......------.(((..(((((((...((((((....)))))).))).)))).))).----------- ( -35.60, z-score = -2.56, R) >droSim1.chr2L 148689 97 - 22036055 CAUCUGCCCCAGGGUUUCGGAGGUACACUCCACAUUACGUGGGGCUUUUUC------UGGACACCGUUCGUUCUGCGGCAUCUGCUGCACUGACACGGCUCUG----------- .....((((((.(.....((((.....))))......).))))))......------.(((..(((((((...((((((....)))))).))).)))).))).----------- ( -35.40, z-score = -2.42, R) >droSec1.super_14 144964 97 - 2068291 CAUCUGCCCCAGGGUUUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUC------UGGACACUGUUCGUUCUGCGGCAUCUGCUGCACUGACACGGCUCUG----------- .....(((.(((...((((((((....((((((.....))))))...))))------))))..)))...(((.((((((....))))))..)))..)))....----------- ( -33.00, z-score = -2.32, R) >droYak2.chr2L 135429 97 - 22324452 CAUCUGCCCCAGAGUCUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUC------UGGACACAGUGCGGUCUGCGGCAUAUGCUGCACUGACACGGCGCUG----------- ..((((...))))(((.((((((....((((((.....))))))...))))------))))).((((((.(((((((((....))))))..)))...))))))----------- ( -40.00, z-score = -3.20, R) >droEre2.scaffold_4929 187241 97 - 26641161 CAUCUGCCCCAGAGUCUCGGAGAUACACUCCACAUUCCGCGGGGCUUUUUC------UGGGCACAGUUCGGUCUGCGGCAUAUGCUGCACUGACACAGCGCUG----------- ....(((((.((((((((((((.....)))).(.....).))))))))...------.)))))((((.(.(((((((((....))))))..)))...).))))----------- ( -34.80, z-score = -1.69, R) >dp4.chr4_group2 172236 114 - 1235136 UAUUUGCCAAAAGGCAAUUGACGCGCAUUCAACACUGUGCGAGGCUAUAUCUUACAAUCGGAACAAUCAGCUUUCCGGCACCUGCUGCACCAACACGGCGCCAAUGGAUAGCAA ...(((((....)))))....((((((........))))))..(((((.........((((((.........))))))..((....((.((.....)).))....))))))).. ( -30.50, z-score = -0.90, R) >droPer1.super_8 249132 114 + 3966273 UAUUUGCCAAAAGGCAAUUAACGCGCAUUCAACACUGUGCGAGGCUAUAUCUUACAAUCGCAACAAUCAGCUUUCCGGCACCUGCUGCACCAACACGGCGCCAAUGGAUAGCAA ((.(((((....))))).)).((((((........))))))............................(((.((((((....)))((.((.....)).))....))).))).. ( -28.80, z-score = -0.72, R) >consensus CAUCUGCCCCAGGGUUUCGGAGGUACACUCCACAUUACGUGGGGCUUUUUC______UGGACACAGUUCGUUCUGCGGCAUCUGCUGCACUGACACGGCGCUG___________ .....(((((...((...((((.....)))).....))..)))))............................((((((....))))))......................... (-16.88 = -17.37 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:11 2011