| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,741,112 – 18,741,204 |
| Length | 92 |
| Max. P | 0.644054 |
| Location | 18,741,112 – 18,741,204 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.63 |
| Shannon entropy | 0.34825 |
| G+C content | 0.47615 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -21.65 |
| Energy contribution | -21.23 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18741112 92 - 23011544 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU-UUCGCCG------------------------ -...((((.........(((((((((((..((...((......)).)).))).))))))))(((((((.(((((...)))))))))-)))))))------------------------ ( -27.20, z-score = -1.49, R) >droSim1.chr2L 18428574 92 - 22036055 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU-UUCGCCG------------------------ -...((((.........(((((((((((..((...((......)).)).))).))))))))(((((((.(((((...)))))))))-)))))))------------------------ ( -27.20, z-score = -1.49, R) >droSec1.super_7 2362337 92 - 3727775 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU-UUCGCCG------------------------ -...((((.........(((((((((((..((...((......)).)).))).))))))))(((((((.(((((...)))))))))-)))))))------------------------ ( -27.20, z-score = -1.49, R) >droYak2.chr2R 5254690 92 - 21139217 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU-UUCGCCG------------------------ -...((((.........(((((((((((..((...((......)).)).))).))))))))(((((((.(((((...)))))))))-)))))))------------------------ ( -27.20, z-score = -1.49, R) >droEre2.scaffold_4845 17053620 92 + 22589142 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU-UUCGCCG------------------------ -...((((.........(((((((((((..((...((......)).)).))).))))))))(((((((.(((((...)))))))))-)))))))------------------------ ( -27.20, z-score = -1.49, R) >droAna3.scaffold_12916 8213677 88 - 16180835 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUUCCU----------------------------- -.((((((.((((.((((((((((((((..((...((......)).)).))).)))))))).....)))...))))...))))))....----------------------------- ( -22.00, z-score = -0.28, R) >dp4.chr4_group3 4725972 117 - 11692001 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUUUUUUGCCGACUCCAUGGCUCAUUGUUUCCCCG -.(((((.((((.(((..((((((((..(((((((...(((.((.(((.......))))).)))...)))))))....)).))))))..))).))))))...)))............. ( -31.90, z-score = -0.57, R) >droPer1.super_1 6217711 117 - 10282868 -CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUUUUUUGCCGACUCCAUGGCUCAUUGUUUCCCCG -.(((((.((((.(((..((((((((..(((((((...(((.((.(((.......))))).)))...)))))))....)).))))))..))).))))))...)))............. ( -31.90, z-score = -0.57, R) >droWil1.scaffold_180708 1414421 117 + 12563649 AAGUCAGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCAUAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUCUUGCUGACUCGAGUUCAUUGUUUGAGUCGGCG- ..(((.(.((((((((...(((((((..(((((((...(((.((.(((.......))))).)))...)))))))....)).))))))))))))))((.((((.....))))))))).- ( -37.50, z-score = -2.26, R) >droVir3.scaffold_12963 2275824 85 + 20206255 -UCACAGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCAUGGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU-------------------------------- -..(((((.((((.(((((((((((((((......((......)).))..)).)))))))).....)))...))))...)))))..-------------------------------- ( -19.30, z-score = 0.06, R) >droGri2.scaffold_15252 11174989 92 + 17193109 -UCACAGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU-CGAGACG------------------------ -........(((....((((((((((((..((...((......)).)).))).)))))))))..............((((.....)-)))))).------------------------ ( -25.10, z-score = -1.27, R) >droMoj3.scaffold_6500 5693129 84 + 32352404 -UCACAGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCAUAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUU--------------------------------- -..(((((.((((.((((((((((((((..((...((......)).)).))).)))))))).....)))...))))...))))).--------------------------------- ( -20.00, z-score = -0.70, R) >consensus _CAGCGGUAGUCAGCAUUGGGGCGUCUGCAGUUCAACGUUCAAGUGGCACAGUACGCCCUAGAAAAAUGAAUUGAUUCGAUUGUUU_UUCGCCG________________________ ..((((((.((((.((((((((((((((..((...((......)).)).))).)))))))).....)))...))))...))))))................................. (-21.65 = -21.23 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:29 2011