Locus 2398

Sequence ID dm3.chr2L
Location 18,736,774 – 18,736,886
Length 112
Max. P 0.895465
window3299

overview

Window 9

Location 18,736,774 – 18,736,886
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Shannon entropy 0.07219
G+C content 0.46131
Mean single sequence MFE -35.34
Consensus MFE -31.57
Energy contribution -31.61
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -2.11
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.12
SVM RNA-class probability 0.895465
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 18736774 112 + 23011544
AAAGAUUCAGUUGAGUGGCUAUCUGCCA--------GGAAUGUGGAAUGGCGGCAAAGAGACGAGCCGUAACGAACAUGGCUAUCUUUACGGCACCCAGCACUUUUAACUUUAAUGGAAA
.....((((...(((((((.....))).--------.(((.(((...(((..((..(((((..((((((.......)))))).)))))...))..))).))).))).))))...)))).. ( -30.70, z-score =  -1.10, R)
>droEre2.scaffold_4845 17049435 112 - 22589142
AAAGAUUCAGUUGGGUGGCUAUCUGCCA--------GGAAUGUGGAAUGGCGGCAAAGAGACGAGCCGUAACGAACAUGGCUAUCUUUACGGCACCCAGCACUUUUAACUUUAAUGGAAA
.........((((((((.(...((((((--------...........)))))).(((((....((((((.......)))))).)))))..).)))))))).................... ( -34.60, z-score =  -2.01, R)
>droYak2.chr2R 5250417 120 + 21139217
AAAGAUUCAGUUGGGUGGCUAUCUGCCACCCAAUGUGGAAUGUGGAAUGGCGGCAAAGAGACGAGCCGUAACGAACAUGGCUAUCUUUACGGCACCCAACACUUUUAACAUUAAUGGUAA
....((((.((((((((((.....))))))))))...))))(((...(((..((..(((((..((((((.......)))))).)))))...))..))).))).................. ( -42.20, z-score =  -3.43, R)
>droSec1.super_7 2358100 112 + 3727775
AAAGAUUCAGUUGGGUGGCUAUCUGCCA--------GGAAUGUGGAAUGGCGGCAAAGAGACGAGCCGUAACGAACAUGGCUAUCUUUACGGCACCCAGCACUUUUAACUUUAAUGGAAA
.........((((((((.(...((((((--------...........)))))).(((((....((((((.......)))))).)))))..).)))))))).................... ( -34.60, z-score =  -2.01, R)
>droSim1.chr2L 18424340 112 + 22036055
AAAGAUUCAGUUGGGUGGCUAUCUGCCA--------GGAAUGUGGAAUGGCGGCAAAGAGACGAGCCGUAACGAACAUGGCUAUCUUUACGGCACCCAGCACUUUUAACUUUAAUGGAAA
.........((((((((.(...((((((--------...........)))))).(((((....((((((.......)))))).)))))..).)))))))).................... ( -34.60, z-score =  -2.01, R)
>consensus
AAAGAUUCAGUUGGGUGGCUAUCUGCCA________GGAAUGUGGAAUGGCGGCAAAGAGACGAGCCGUAACGAACAUGGCUAUCUUUACGGCACCCAGCACUUUUAACUUUAAUGGAAA
.........((((((((.(...((((((...................)))))).(((((....((((((.......)))))).)))))..).)))))))).................... (-31.57 = -31.61 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:28 2011