| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,733,645 – 18,733,737 |
| Length | 92 |
| Max. P | 0.835538 |
| Location | 18,733,645 – 18,733,737 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 99.64 |
| Shannon entropy | 0.00707 |
| G+C content | 0.49094 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -24.99 |
| Energy contribution | -24.85 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.25 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18733645 92 + 23011544 CCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCUUCUUGGCCACUUCACAC ......((((.(((((.((((...((((((.....))))))...)))).((.((.(((...))).)).)).....)))))))))........ ( -25.00, z-score = -1.37, R) >droSim1.chr2L 18421230 92 + 22036055 CCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCUUCUUGGCCACUUCACAC ......((((.(((((.((((...((((((.....))))))...)))).((.((.(((...))).)).)).....)))))))))........ ( -25.00, z-score = -1.37, R) >droSec1.super_7 2355033 92 + 3727775 CCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCUUCUUGGCCACUUCACAC ......((((.(((((.((((...((((((.....))))))...)))).((.((.(((...))).)).)).....)))))))))........ ( -25.00, z-score = -1.37, R) >droYak2.chr2R 5247497 92 + 21139217 CCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCUUCUUGGCCACUUCACAC ......((((.(((((.((((...((((((.....))))))...)))).((.((.(((...))).)).)).....)))))))))........ ( -25.00, z-score = -1.37, R) >droEre2.scaffold_4845 17046529 92 - 22589142 CCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCUUCUUGGCCACUUCACAC ......((((.(((((.((((...((((((.....))))))...)))).((.((.(((...))).)).)).....)))))))))........ ( -25.00, z-score = -1.37, R) >droAna3.scaffold_12916 8208766 92 + 16180835 CCUACUUGGCACGAGGCUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCUUCUUGGCCACUUCACAC .......((((((((..((((...((((((.....))))))...))))..)))..(((...)))..)))))..................... ( -24.10, z-score = -0.66, R) >consensus CCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCUUCUUGGCCACUUCACAC ......((((.(((((.((((...((((((.....))))))...)))).((.((.(((...))).)).)).....)))))))))........ (-24.99 = -24.85 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:27 2011