| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,728,373 – 18,728,484 |
| Length | 111 |
| Max. P | 0.647631 |
| Location | 18,728,373 – 18,728,484 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.99 |
| Shannon entropy | 0.12409 |
| G+C content | 0.28829 |
| Mean single sequence MFE | -21.87 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.70 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18728373 111 - 23011544 AGCUGGAAGCACACUAAACAAAAUUAAUUGCUACAAAAUGUUGUUAUUUACUUUUAGUAACAAAACUUUCCAAAUAUCAAAUAAAUUAGUUAAGUACAUUAUGUGCUCCUA ....(((.(((((...........................((((((((.......)))))))).((((..(.(((.........))).)..))))......)))))))).. ( -16.20, z-score = -0.52, R) >droSim1.chr2L 18415954 111 - 22036055 AGCUGGGAGCACACUAAGCAAAAUUAAUUGCCAUAAAAUGUUGUUAUUUACUCGUAGCAACAAAACUUUUCAAAUAUCAAAUAAAUUAGUUAAGUACAUUAUGUGCUCCUA ...((((((((((....((((......)))).......(((((((((......))))))))).......................................)))))))))) ( -26.70, z-score = -3.28, R) >droSec1.super_7 2349768 111 - 3727775 AGCUGGGAGCACACUAAGCAAAAUUAAUUGCCACAAAAUGUUGUUAUUUACUUUUGGCAACAAAACUUUCCAAAUUUCAAAUAAAUUAGUUGAUUGCAUUAAAUGCUCCUA ...((((((((...((((((..(((((((.........((((((((........))))))))..........(((((.....))))))))))))))).)))..)))))))) ( -22.70, z-score = -1.44, R) >consensus AGCUGGGAGCACACUAAGCAAAAUUAAUUGCCACAAAAUGUUGUUAUUUACUUUUAGCAACAAAACUUUCCAAAUAUCAAAUAAAUUAGUUAAGUACAUUAUGUGCUCCUA ...((((((((((((((((((......)))).......((((((((........)))))))).......................)))))(((.....))).))))))))) (-18.36 = -18.70 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:26 2011