| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,724,937 – 18,725,042 |
| Length | 105 |
| Max. P | 0.967050 |
| Location | 18,724,937 – 18,725,042 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 134 |
| Reading direction | forward |
| Mean pairwise identity | 68.88 |
| Shannon entropy | 0.53679 |
| G+C content | 0.38796 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -12.88 |
| Energy contribution | -13.12 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18724937 105 + 23011544 GCACAUGAAACAACUACACUAUCAAACGACUUUUAGAAUAUUUC--------------GGUAAUAAACUAGAUUUUUCCG---------------CCAGAAGCAAGGUCACACUAGGCUUAAGUGUGGCCAGCC ((.........................(.(((((.(((...((.--------------.((.....))..))...)))..---------------..))))))..(((((((((.......))))))))).)). ( -19.30, z-score = -0.57, R) >droSim1.chr2L 18412560 123 + 22036055 GCACAUGAAACAACUACACUAACAAACGACUUUUAGAAUAUUUCUAAAUCC-------GGUAAUAAACAGGAUUUAAUGGGGAUCCCCC----CGCCAGAAGCAAGGUCACACUAGACUUAAGUGUGACCAGCC ((.........................(.(((((..........(((((((-------.((.....)).)))))))..((((....)))----)...))))))..(((((((((.......))))))))).)). ( -33.50, z-score = -3.94, R) >droSec1.super_7 2346423 104 + 3727775 GCACACGAAACAACUACACUUACAAACGACUUUUAGAAUAUCCCUAAAUAC-------GGUAAUAAACAUGAUUUGACA-----------------------CAUGAUGACACUAGACUUAAGUGUGACCAGCC ..............((((((((....((...(((((.......)))))..)-------)........((((........-----------------------)))).............))))))))....... ( -12.90, z-score = -1.10, R) >droYak2.chr2R 5238876 134 + 21139217 GAACAUGGAACAACUACACUGUCAAAUGAUUUUUAGAAUAUAUAGAUAUAGAAUAUUAAAUAAUAAACAGGAUUUAAUGAGGAUGAGCUAUUGCACCAGAAGAAAGGUCACACUAGACUCAAGUGUGACCAGCG .....(((..((.((.((..(((...((.((.(((.(((((.((....))..)))))...))).)).)).)))....)).)).)).((....)).))).......(((((((((.......))))))))).... ( -23.80, z-score = -1.36, R) >droEre2.scaffold_4845 17037821 121 - 22589142 GCACAUGGUAAAACUACACUGUCAAAUGGCUUUUAGAAUAUCCCCAAAUCA-------UGUUAUAAACAUUAAACAUCUAAA------CAUUCCGCCAGAAACAAGGUCACACUGGACCUAAGUGUGACCAGCC ((...((((....(((....(((....)))...)))..............(-------((((..........))))).....------......)))).......(((((((((.......))))))))).)). ( -24.60, z-score = -1.66, R) >consensus GCACAUGAAACAACUACACUAUCAAACGACUUUUAGAAUAUCUCUAAAUAC_______GGUAAUAAACAGGAUUUAACGA_____________C_CCAGAAGCAAGGUCACACUAGACUUAAGUGUGACCAGCC .........................................................................................................(((((((((.......))))))))).... (-12.88 = -13.12 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:25 2011