Locus 2394

Sequence ID dm3.chr2L
Location 18,719,320 – 18,719,430
Length 110
Max. P 0.642109
window3295

overview

Window 5

Location 18,719,320 – 18,719,430
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 98.18
Shannon entropy 0.03078
G+C content 0.48182
Mean single sequence MFE -25.42
Consensus MFE -25.72
Energy contribution -25.16
Covariance contribution -0.56
Combinations/Pair 1.09
Mean z-score -0.86
Structure conservation index 1.01
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.32
SVM RNA-class probability 0.642109
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 18719320 110 - 23011544
AUUUGGUUGGUACUCGCAUUCGUAUCUGUAUCUGUGGCUUUUUCGCUGUGCAUCUGCAGCCGCACGUACCUGUGUAUCUGAAUCUGUAUCCGUACCUUCACCGUCCGUUU
....(((.(((((.((.((((((((..((((.(((((((.....((.........))))))))).))))..)))....))))).)).....)))))...)))........ ( -24.20, z-score =  -0.54, R)
>droSim1.chr2L 18406991 110 - 22036055
AUUCGGUUGGUACUCGCAUUCGUAUCUGUAUCUGUGGCUUUUUCGCUGUGCAUCUGCAGCCGCACGUACCUGUGUAUCUGAAUCUGUAUCCGUACCUUCACCGUCCGUUU
...((((.(((((.((.((((((((..((((.(((((((.....((.........))))))))).))))..)))....))))).)).....)))))...))))....... ( -25.60, z-score =  -0.93, R)
>droSec1.super_7 2340956 110 - 3727775
AUUCGGUUGGUACUCGCAUUCGUAUCUGUAUCUGUGGCUUUUUCGCUGUGCAUCUGCAGCCGCACGUACCUGUGUAUCUGAAUCUGUAUCCGUACCUUCACCGUCCGUUU
...((((.(((((.((.((((((((..((((.(((((((.....((.........))))))))).))))..)))....))))).)).....)))))...))))....... ( -25.60, z-score =  -0.93, R)
>droYak2.chr2R 5233178 110 - 21139217
AUUUGGUUGGUACUCGCAUUCGCAUCUGUAUCUGUGGCUUUUUAGCUGUGCAUCUGCAGCCACACGUACCUGUGUAUCUGAAUCUGUAUCCGUACCUUCACCGUCCGUUU
....(((.(((((.((.((((((((..((((.(((((((.....((.........))))))))).))))..))))....)))).)).....)))))...)))........ ( -27.30, z-score =  -1.42, R)
>droEre2.scaffold_4845 17032162 110 + 22589142
AUUUGGUUGGUACUCGCAUUCGUAUCUGUAUCUGUGGCUUUUUAGCUGUGCAUCUGCAGCCGCACGUACCUGUGUAUCUGAAUCUGUAUCCGUACCUUCACCGUCCGUUU
....(((.(((((.((.((((....(((((..(((((((....))))..)))..)))))..(((((....)))))....)))).)).....)))))...)))........ ( -24.40, z-score =  -0.46, R)
>consensus
AUUUGGUUGGUACUCGCAUUCGUAUCUGUAUCUGUGGCUUUUUCGCUGUGCAUCUGCAGCCGCACGUACCUGUGUAUCUGAAUCUGUAUCCGUACCUUCACCGUCCGUUU
...((((.(((((.((.((((((((..((((.(((((((.....((.........))))))))).))))..)))....))))).)).....)))))...))))....... (-25.72 = -25.16 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:25 2011