| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,713,953 – 18,714,020 |
| Length | 67 |
| Max. P | 0.996896 |
| Location | 18,713,953 – 18,714,020 |
|---|---|
| Length | 67 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 82.40 |
| Shannon entropy | 0.29849 |
| G+C content | 0.42198 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -14.22 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.25 |
| Mean z-score | -3.25 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.00 |
| SVM RNA-class probability | 0.996896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18713953 67 + 23011544 CACUUUUUAUAC----GUCGGGAGGGCAGCACAAUCUUUUGCAUCUGCAUCUCUUGACUGGAAGUUGAUAG .((((((.....----(((((((((((((..(((....)))...)))).))))))))).))))))...... ( -19.60, z-score = -2.84, R) >droSim1.chr2L 18403246 71 + 22036055 CACUUUUUAUACAUACGUCGGGAGGGCAGCACAAUCUUUUGCAUCUGCAUCUCUUGACUGGAAGUAGAUAG ..((.(((((...((.(((((((((((((..(((....)))...)))).)))))))))))...))))).)) ( -19.40, z-score = -2.85, R) >droSec1.super_7 2335659 67 + 3727775 CACUUUUUAUAC----GUCGAGAGGGCAGCACAAUCUUUUGCAUCUGCAUCUCUCGACUGGAAGUAGAUAG .((((((.....----(((((((((((((..(((....)))...)))).))))))))).))))))...... ( -23.10, z-score = -4.09, R) >droYak2.chr2R 5227739 63 + 21139217 UACUUUUUAUUU----GUCGGGAGGUCAGCACAAUCUUUG----UUGCAUCUCUUUACUGGCACUGGAUAU ...........(----(((((((((((((((.......))----))).)))))....))))))........ ( -13.80, z-score = -1.86, R) >droEre2.scaffold_4845 17026780 63 - 22589142 UACUUUUUAUCC----GUCGGGAGAGCAGCACAAUCUUUG----UUGCAUCUCUUGACUUGUAAUAGAUAU ..((..((((..----(((((((((((((((.......))----)))).)))))))))..)))).)).... ( -21.60, z-score = -4.59, R) >consensus CACUUUUUAUAC____GUCGGGAGGGCAGCACAAUCUUUUGCAUCUGCAUCUCUUGACUGGAAGUAGAUAG ................(((((((((((((..(((....)))...)))).)))))))))............. (-14.22 = -14.70 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:24 2011