| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,711,324 – 18,711,375 |
| Length | 51 |
| Max. P | 0.697955 |
| Location | 18,711,324 – 18,711,375 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 88.89 |
| Shannon entropy | 0.15712 |
| G+C content | 0.32026 |
| Mean single sequence MFE | -7.87 |
| Consensus MFE | -6.07 |
| Energy contribution | -6.07 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18711324 51 + 23011544 UUAAAACCCUUUUCACUUUCUGUACUCUAGCUUUAAGUGAUCAUUUUUCGG ............((((((...((......))...))))))........... ( -6.30, z-score = -1.74, R) >droSim1.chr2L 18400529 51 + 22036055 AUAAAAAACUUUUCACUUUCUGUAUUCCAGCUUUAAGUGAUCAUUUUUUGG .(((((((....((((((.(((.....)))....))))))...))))))). ( -8.70, z-score = -2.66, R) >droYak2.chr2R 5225089 51 + 21139217 GUAAAACACUUUUCACUUUUUGUACUCCAGCUUGAAGUGAUCAUUUUUCGG ............(((((((..((......))..)))))))........... ( -8.60, z-score = -1.71, R) >consensus AUAAAACACUUUUCACUUUCUGUACUCCAGCUUUAAGUGAUCAUUUUUCGG ............((((((...((......))...))))))........... ( -6.07 = -6.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:23 2011