| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,697,795 – 18,697,887 |
| Length | 92 |
| Max. P | 0.954591 |
| Location | 18,697,795 – 18,697,887 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 68.05 |
| Shannon entropy | 0.65216 |
| G+C content | 0.40023 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -8.16 |
| Energy contribution | -8.03 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18697795 92 - 23011544 --------UCCUACACCUUCCAAUCUAAACGGUAUUCGUCCACCAGCAGCAAGUGAUGAUGGAUUAGCCAACCUAUA-AUACAUAGUAAAAUUAA-UUAGGG----- --------.((((.................(((((((((((((.........)))..)))))))..)))...((((.-....)))).........-.)))).----- ( -13.00, z-score = 0.35, R) >droGri2.scaffold_15252 13632941 96 - 17193109 --------CCCUAAGCCUUCCAAUCCAAACGAUACUCAUCGACCAGCAACAAAUGUUGAUGGAUUAACCAACCUAUAUGGUUAAUAUACAAAUAUUGUUUAUAA--- --------..................((((((((........(((.((((....)))).)))((((((((.......)))))))).......))))))))....--- ( -19.40, z-score = -3.38, R) >droMoj3.scaffold_6500 5664435 97 - 32352404 --------CUUUAAGCCUUCCAGUCCAAACGAUAUUCAUCAACCAACAAUAAAUGCUGAUUAAUUAUCCAACCUAAA-GGAUAAU-AAUAAAUAUUUUUGUUUAGCA --------......((..............(((....)))....(((((.(((((...((((.((((((........-)))))))-)))...))))))))))..)). ( -12.10, z-score = -1.57, R) >droVir3.scaffold_12963 16201885 90 - 20206255 --------CCCUAAGCCUUCCAGUCCAAACGAUACUCAUCAACCAGCAGCAAGUGCUGAUUGAUUAGCCAUCCUGUGUGGAUAGU-UAAAAAUAUAGAA-------- --------..............(((((.(((((.((.(((((.(((((.....))))).))))).))..)))..)).)))))...-.............-------- ( -18.50, z-score = -1.80, R) >droWil1.scaffold_180772 4174114 101 - 8906247 UUUGGAUUUCUUAGACCUUCCAUUCCAAGCGGAAUUCGUCUACCAUCAGUAGAUGAGUGUGAAUGUUCCAACCUAAA-UGAUAU-AUAGACGAAA-GUUAAUAA--- .(((((....(((.((.....(((((....)))))((((((((.....)))))))))).)))....)))))......-.....(-((.(((....-))).))).--- ( -24.20, z-score = -2.57, R) >droSim1.chr2L 18386955 92 - 22036055 --------UCCUACACCUUCCAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA-AUACAUAGAAAAAUUAA-UUAGGG----- --------.((((.................(((....(((((.(((((.....))))).)))))..)))...((((.-....)))).........-.)))).----- ( -21.00, z-score = -2.25, R) >droSec1.super_7 2319297 92 - 3727775 --------UCCUACACCUUCCAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA-AUACAUAGAAAAAUUAU-UUAGGG----- --------.((((.................(((....(((((.(((((.....))))).)))))..)))...((((.-....)))).........-.)))).----- ( -21.00, z-score = -2.20, R) >droYak2.chr2R 5211466 98 - 21139217 --------UCCUACACCUUCCAGUCUAAGCGGUAUUCGUCCACCAUCAGCAAGUGCUGAUGGAUUAGCCAACCUAUG-UAUAAUAGAAAGAGAAAAAUGAGCUAAGU --------................((.(((..((((..(((.((((((((....))))))))..........((((.-....))))...).))..)))).))).)). ( -22.50, z-score = -1.94, R) >droEre2.scaffold_4845 17010652 92 + 22589142 --------UCCUACACCUUCCAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAGUGCUGAUGGAUUAGCCAACCUAUG-AUAAUUAGAAACAUGUA-UUAGGC----- --------.((((.................(((....(((((.(((((.....))))).)))))..)))...(((..-.....))).........-.)))).----- ( -18.60, z-score = -0.34, R) >droAna3.scaffold_12916 2584904 85 - 16180835 --------UCUUACAUCUUCCAGUCCAAACGGAACUCGUCCACCAGCAGCAAAUGAUGAUGGAUGAUCCAACCUGAG-AAUGAAUAAAUUAUCC------------- --------.......(((((((((((....)))..(((((((.((.((.....)).)).)))))))......))).)-)).))...........------------- ( -17.40, z-score = -1.42, R) >dp4.chr4_group3 8021201 96 - 11692001 --------UCCUACACUUUCCAGUCCAAGCGGAACUCGUCUACCAGCAGCAAAUGUUGAUGGACCAGCCAACCUACA-AAAUGUAAUAUGCGAAA--UAAGUAGAAU --------..((((..((((((.(((....))).((.(((((.(((((.....))))).))))).))..........-..........)).))))--...))))... ( -19.20, z-score = -1.51, R) >droPer1.super_1 9470757 96 - 10282868 --------UCCUACACUUUCCAGUCCAAGCGGAACUCGUCUACCAGCAGCAAAUGUUGAUGGACCAGCCAACCUACA-AAAUGUAAUAUGCGAAA--UAAGUAGAAU --------..((((..((((((.(((....))).((.(((((.(((((.....))))).))))).))..........-..........)).))))--...))))... ( -19.20, z-score = -1.51, R) >consensus ________UCCUACACCUUCCAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA_AAAUAUAAAAAAAUUAA_UUAGGU_____ .....................................(((((.(((((.....))))).)))))........................................... ( -8.16 = -8.03 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:22 2011