| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,666,040 – 18,666,130 |
| Length | 90 |
| Max. P | 0.865751 |
| Location | 18,666,040 – 18,666,130 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 75.62 |
| Shannon entropy | 0.41961 |
| G+C content | 0.44267 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -17.84 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18666040 90 - 23011544 CCGAAAUUAGCCGAUUAGAGCGCUGCUUGCGAGUAGUUCUCAGAUUAGCCGCCAGGCGGAUAAGUUUUAAUGGAGUAGCAGUU-----GAUUUGA- ...(((((((((.((((((((.(((((((((..(((((....)))))..)).)))))))....)))))))).).......)))-----)))))..- ( -24.31, z-score = -0.82, R) >droSim1.chr2L 18354367 89 - 22036055 CCAAAAUUAGCCGA-UAGAGCGCUGCUUGCGAGUAGUUCUCAGAUUAGCCGUAAGGUGGAUAAGUUUAAAUGAAGCAACAGUU-----UAUUUAA- ......(((.((..-..(((.((((((....)))))).)))......(((....))))).)))..(((((((((.......))-----)))))))- ( -19.70, z-score = -0.86, R) >droSec1.super_7 2287665 95 - 3727775 CCGAAAUUAGCCGA-AAGAGCGCUGCUUGCGAGUAGUUCUCAGAGUAGCCGCCAGGCGGAUAAGUUUUAAUGAAGCAACAGUUGAAAAUGAUUAAU .........(((..-..(.(((((((((..(((.....))).)))))).)))).))).(((...(((((((.........)))))))...)))... ( -21.90, z-score = -0.66, R) >droYak2.chr2R 5179269 81 - 21139217 CCGAAAUGAGCCAC-CAGAGCGCUGCUUGUAAGUAGUUCUCACAGUAGCCGCAAGGUGGAUAA-UUGUAAUAGAGAAGCAUUU------------- ....(((...((((-(...((((((((.((.((.....)).))))))).)))..)))))...)-)).................------------- ( -20.50, z-score = -1.48, R) >droEre2.scaffold_4845 16978726 88 + 22589142 CCGAAAUUGGCCAU-GAGAGCGCUGCUGGUAAGUAGUUCUCAGAGCGGCCGUAAGGUGGAUAA-AUUGAAUAGAGAAGCAGUUGAUUUUA------ ..(((((..((..(-((((..((((((....)))))))))))...(.(((....))).)....-................))..))))).------ ( -25.00, z-score = -1.99, R) >consensus CCGAAAUUAGCCGA_UAGAGCGCUGCUUGCGAGUAGUUCUCAGAGUAGCCGCAAGGUGGAUAAGUUUUAAUGGAGAAGCAGUU_____UA_UU_A_ ..........((.....(((.((((((....)))))).)))......(((....)))))..................................... (-17.84 = -17.60 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:21 2011