| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,662,972 – 18,663,062 |
| Length | 90 |
| Max. P | 0.625378 |
| Location | 18,662,972 – 18,663,062 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 87.31 |
| Shannon entropy | 0.17066 |
| G+C content | 0.35602 |
| Mean single sequence MFE | -19.87 |
| Consensus MFE | -16.47 |
| Energy contribution | -16.58 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18662972 90 + 23011544 UAUGCACUUAUCAUUUUGACCAAUUUUGGAUUUUGGUCAGUGCGUAAGUCUGUCUUAAUAUAACCAGGAAAAGGAGUAAAAGUGCUUGGA ...((((((......((((((((.........))))))))......(.(((.((((.........))))...))).)..))))))..... ( -18.90, z-score = -0.57, R) >droSec1.super_7 2284528 80 + 3727775 UAUGCACUUACCAUUUUG----------GAUUUUGGUUAGUGCGUAAGUCUGCCUUAAUAUAAACAAGAAAACGAGUAAAAGUGCUUGGA ((((((((.((((.....----------.....)))).))))))))..........................((((((....)))))).. ( -19.40, z-score = -1.91, R) >droSim1.chr2L 18351226 80 + 22036055 UAUGCACUUACCAUUUUG----------GAUUUUGGUUAGUGCGUAAGUCUGGCUUAAUAUAAACAGGAAAACGAGUAAAAGUGCUUGGA ((((((((.((((.....----------.....)))).))))))))..((((............))))....((((((....)))))).. ( -21.30, z-score = -2.36, R) >consensus UAUGCACUUACCAUUUUG__________GAUUUUGGUUAGUGCGUAAGUCUGCCUUAAUAUAAACAGGAAAACGAGUAAAAGUGCUUGGA ((((((((.((((....................)))).))))))))..........................((((((....)))))).. (-16.47 = -16.58 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:19 2011