| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,589,231 – 18,589,324 |
| Length | 93 |
| Max. P | 0.974999 |
| Location | 18,589,231 – 18,589,324 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 67.65 |
| Shannon entropy | 0.58599 |
| G+C content | 0.57365 |
| Mean single sequence MFE | -33.82 |
| Consensus MFE | -19.81 |
| Energy contribution | -20.82 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.974999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18589231 93 + 23011544 --UUUCCUUGGCCGUGUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAACCGAGCCGGAUGAAGGAAGUCCGGACGGAAUGGUCAUGGAUGUAGAA------------ --..(((.(((((((..(((....((((((....)))))).)))....(((..((((((.......)))))).))).))))))).))).......------------ ( -41.40, z-score = -3.64, R) >droSim1.chr2L 18280065 93 + 22036055 --UUUCCUGGGCCGUGUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAACCGAGCCGGAUGAAGGAAGUCCGGGCGGACUGGUCGUGAAUGUAGAA------------ --.......(((((.(((((....((((((....)))))).)))....(((..((((((.......)))))).))))))))))............------------ ( -36.10, z-score = -1.25, R) >droSec1.super_7 2214479 93 + 3727775 --UUUCCUUGGCCGUGUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAAGCGAGCCGGAUGAAGGAAGUCCGGGCGGACUGGUCAUGGAUGUAGAA------------ --..(((((((((((.((((....((((((....)))))).))))...))).)))))((((....(((((....)))))..))))))).......------------ ( -38.10, z-score = -2.02, R) >droYak2.chr2R 5106384 87 + 21139217 --UUUCCUUGGCCGUGUGGCGUCGCGGGUCAAAUGACCAGAGCCGUAACCUAGCCUGAUGGAGAAAGUCCGGACGGAAUGGUCAUGAAA------------------ --.(((..(((((((..(((.((...((((....)))).)))))....((...((.(((.......))).))..)).))))))).))).------------------ ( -27.80, z-score = -0.56, R) >droEre2.scaffold_4845 16906348 76 - 22589142 --UUUCCUUGGCCGUGUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAACCGAGCCGGACGCAGAAAGUCCGGACGGAG----------------------------- --..(((((((...((((((....((((((....)))))).)))))).))))(((((((.......)))))).)))).----------------------------- ( -33.00, z-score = -2.18, R) >anoGam1.chrX 17904828 103 + 22145176 UUAUUCAGCGGCCCGGUUUUGGGACCGGUCGAUUCUUGGGAGCAGCAGC--AGC--AGUGAAAUAAAAACCAGCGAAUUGCUUUUCGAGGCCAUCUUUGAAGGAUGA ........(((((.((((....)))))))))..(((((..(..(((((.--.((--.((.........))..))...))))))..))))).(((((.....))))). ( -26.50, z-score = 0.89, R) >consensus __UUUCCUUGGCCGUGUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAACCGAGCCGGAUGAAGGAAGUCCGGACGGAAUGGUCAUGGAUGUAGAA____________ ...........((((.((((....((((((....)))))).))))........((((((.......))))))))))............................... (-19.81 = -20.82 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:14 2011