Locus 2382

Sequence ID dm3.chr2L
Location 18,565,139 – 18,565,200
Length 61
Max. P 0.889664
window3282

overview

Window 2

Location 18,565,139 – 18,565,200
Length 61
Sequences 5
Columns 61
Reading direction reverse
Mean pairwise identity 87.54
Shannon entropy 0.21752
G+C content 0.36492
Mean single sequence MFE -14.45
Consensus MFE -10.98
Energy contribution -12.30
Covariance contribution 1.32
Combinations/Pair 1.16
Mean z-score -2.20
Structure conservation index 0.76
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.09
SVM RNA-class probability 0.889664
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 18565139 61 - 23011544
AAGAAUCUUGCUUUGUGAUUGUGCUAUAAAAUAUUAACGAACCCAGGCGCGAUUUUAAGUA
........(((((...(((((((((....................)))))))))..))))) ( -11.65, z-score =  -1.28, R)
>droEre2.scaffold_4845 16883421 61 + 22589142
UAGAAGCUUGCUUUGUGCUUGGGCCAUAAAAUAUUAACGAGCCAAGGCGAGAUUUUAAGGA
(((((.(((((((((.(((((................)))))))))))))).))))).... ( -20.29, z-score =  -3.18, R)
>droYak2.chr2R 5082904 61 - 21139217
UAGAAUCCUGCUUCGUGCUUGUGCCAUAAAAUAUUAACGAGCCAAGGCGAGAUUUUAAGUA
(((((((.(((((.(.((((((..............))))))).))))).))))))).... ( -17.64, z-score =  -3.20, R)
>droSec1.super_7 2191327 61 - 3727775
AAGAAUCUCGCUUUGUGAUUGUGCCAUAAAAUAUUAACGAACCAGCGCGAGAUUUUAAGUG
.((((((((((.(((.(.((((..............)))).)))).))))))))))..... ( -16.54, z-score =  -3.37, R)
>droSim1.chr2L 18255995 60 - 22036055
UAGAAUUUU-CUUUGUGAUUGUGCCAUAAAAUAUUAACGAACCAACGCGAGAUUUUAAGUA
(((((((((-(.(((.(.((((..............)))).)))).).))))))))).... (  -6.14, z-score =   0.01, R)
>consensus
UAGAAUCUUGCUUUGUGAUUGUGCCAUAAAAUAUUAACGAACCAAGGCGAGAUUUUAAGUA
.((((((((((((((.(.((((..............)))).)))))))))))))))..... (-10.98 = -12.30 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:13 2011