| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,546,653 – 18,546,734 |
| Length | 81 |
| Max. P | 0.510604 |
| Location | 18,546,653 – 18,546,734 |
|---|---|
| Length | 81 |
| Sequences | 9 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 90.12 |
| Shannon entropy | 0.21588 |
| G+C content | 0.50480 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -21.76 |
| Energy contribution | -21.63 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18546653 81 - 23011544 CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAACAAAAGCA ...((((....(((((...))))).((((((((.((((.........)))).)))))))).................)))) ( -27.20, z-score = -1.52, R) >droSim1.chr2L 18238018 81 - 22036055 CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAACAAAAGCA ...((((....(((((...))))).((((((((.((((.........)))).)))))))).................)))) ( -27.20, z-score = -1.52, R) >droSec1.super_7 2172803 81 - 3727775 CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAACAAAAGCA ...((((....(((((...))))).((((((((.((((.........)))).)))))))).................)))) ( -27.20, z-score = -1.52, R) >droYak2.chr2R 5063978 81 - 21139217 CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAACAAAAACA ..((((((...(((((...)))))...))))))(((.(((.(((((....))))).))))))................... ( -25.30, z-score = -1.19, R) >droEre2.scaffold_4845 16864874 81 + 22589142 CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAACAAAAACA ..((((((...(((((...)))))...))))))(((.(((.(((((....))))).))))))................... ( -25.30, z-score = -1.19, R) >dp4.chr4_group3 3736336 81 - 11692001 CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAAUAAGAACA ..((((((...(((((...)))))...))))))(((.(((.(((((....))))).))))))................... ( -25.30, z-score = -1.24, R) >droPer1.super_1 5215679 81 - 10282868 CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAAUAAGAACA ..((((((...(((((...)))))...))))))(((.(((.(((((....))))).))))))................... ( -25.30, z-score = -1.24, R) >droWil1.scaffold_180772 5735065 81 + 8906247 CGUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAACAAGAGCA ...((((....(((((...))))).((((((((.((((.........)))).)))))))).................)))) ( -27.30, z-score = -1.17, R) >anoGam1.chr3R 14295100 81 - 53272125 CGUAACAGGGGGCCCUGAUGGGCCAGAGCACUAGCAUGUGUCGUUUCAAUGGUUGUCGUUACAAGCGAAACAAGCAAGGUA ..........(((((....)))))...((.((.((.(((.((((((.((((.....))))..)))))).))).)).)))). ( -24.20, z-score = -0.82, R) >consensus CAUUGCUGGCGGGCCCCAUGGGCCAAGCGGCAAGUAUGUGUCGAUUUCGUGGUUGUCGCUACAAAAAUAAGAACAAAAGCA ...........(((((...))))).((((((((.((((.........)))).))))))))..................... (-21.76 = -21.63 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:12 2011