| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,539,805 – 18,539,922 |
| Length | 117 |
| Max. P | 0.965678 |
| Location | 18,539,805 – 18,539,922 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.73 |
| Shannon entropy | 0.08634 |
| G+C content | 0.31909 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -26.34 |
| Energy contribution | -26.57 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18539805 117 - 23011544 CAAUUAAAAGUUUGGGAAUUUUCGCUUGUUUUCAUUAUCAACAAACGGAAAUUGUAGUUUCGUUAGUUUGCUUUCGGGUAAUUUAGCAAGCUGAUGCCAUGCUGCUUAUAAUAUUUU ..((((.((((.(((.((((((((.(((((.........))))).)))))))).......((((((((((((............)))))))))))))))....)))).))))..... ( -28.30, z-score = -2.25, R) >droSim1.chr2L 18230547 117 - 22036055 UAAUUAAAAGUUAGGGAAUUUUCGCCAGUUUUAAUUAUCAACAAACGGAAAUUCUGGUUGCAUUAGUUUGCUUUCGCGUAAUUUAGCAAGCUGAUGUCAUGCUGCUUAUAAUAUUUU ..((((.((((...((((((((((...(((.........)))...))))))))))(((.(((((((((((((............)))))))))))))...))))))).))))..... ( -29.10, z-score = -2.47, R) >droSec1.super_7 2165856 117 - 3727775 UAAUUAAAAGUUUGGGAAUUUUCGCCAGUUUUAAUUAUCAACAAACGGAAAUUCUGGUUGCAUUAGUUUGCUUUCGCGUAAUUUAGCAAGCUGAUGUCAUGCUGCUUAUAAUAUUUU ..((((.((((...((((((((((...(((.........)))...))))))))))(((.(((((((((((((............)))))))))))))...))))))).))))..... ( -29.10, z-score = -2.40, R) >consensus UAAUUAAAAGUUUGGGAAUUUUCGCCAGUUUUAAUUAUCAACAAACGGAAAUUCUGGUUGCAUUAGUUUGCUUUCGCGUAAUUUAGCAAGCUGAUGUCAUGCUGCUUAUAAUAUUUU ..((((.((((...((((((((((...(((.........)))...))))))))))(((.(((((((((((((............)))))))))))))...))))))).))))..... (-26.34 = -26.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:11 2011