| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,500,490 – 18,500,594 |
| Length | 104 |
| Max. P | 0.863400 |
| Location | 18,500,490 – 18,500,594 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.39 |
| Shannon entropy | 0.28666 |
| G+C content | 0.39292 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -16.92 |
| Energy contribution | -16.93 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.863400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18500490 104 - 23011544 CUUAAUACCGC----------GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCCGGAAAAAAAAAA----- .......(((.----------((((((((((((......)))))((...........))....))))))).)...........((((((.......))))))))..........----- ( -23.50, z-score = -2.03, R) >droEre2.scaffold_4845 16819019 103 + 22589142 CUUAAUACCGC----------GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCUAGUAAAAAAAG------ .....(((.(.----------((((((((((((......)))))((...........))....))))))).)..........(((((((.......)))))))))).......------ ( -20.40, z-score = -1.35, R) >droYak2.chr2R 5018070 103 - 21139217 CUUAAUACCGC----------GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCCAGUAAAAAAAA------ .....(((.(.----------((((((((((((......)))))((...........))....))))))).)..........(((((((.......)))))))))).......------ ( -22.70, z-score = -1.97, R) >droSec1.super_7 2126531 101 - 3727775 CUUAAUACCGC----------GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCCGGAAAAAAA-------- .......(((.----------((((((((((((......)))))((...........))....))))))).)...........((((((.......)))))))).......-------- ( -23.50, z-score = -1.96, R) >droSim1.chr2L 18189645 100 - 22036055 CUUAAUACCGC----------GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCCGGAAAAAA--------- .......(((.----------((((((((((((......)))))((...........))....))))))).)...........((((((.......))))))))......--------- ( -23.50, z-score = -1.95, R) >droAna3.scaffold_12916 2410565 91 - 16180835 CUUAAUACCUC----------GCAUAAACAUAAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGC------------------ ...........----------(((((((..........(((((.....)))))..........)))))))..................((((.....))))------------------ ( -12.65, z-score = 0.36, R) >dp4.chr4_group3 3667836 108 - 11692001 UUUAAUACCCC----------GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCCGCAAAAAAUAAGGGGA- .......((((----------((((((((((((......)))))((...........))....))))))).............((((((.......))))))...........)))).- ( -29.50, z-score = -2.89, R) >droPer1.super_1 5149118 108 - 10282868 UUUAAUACCCC----------GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCCGCAAAAAAUAAGGGGA- .......((((----------((((((((((((......)))))((...........))....))))))).............((((((.......))))))...........)))).- ( -29.50, z-score = -2.89, R) >droWil1.scaffold_180708 11670177 110 - 12563649 CUUAAUACCUA---------GGCAUAAACAUGAGAUUUAUCUUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAACCACGAAUUGGCCACAAAACGAUGGCAAGG .......(((.---------(.(((....(((((((..(((...((...........))..)))..)).)))))........(((((((.......))))))).......))).).))) ( -22.50, z-score = -1.54, R) >droVir3.scaffold_12963 18490141 102 - 20206255 CUUAAUACCGCA------CGGGCAUAAACAUGCGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGACACGAAUUGGCCGCAAAG----------- .........((.------.((((((((((.((((.((.(((((.....))))).)))))).).)))))))))...........((((((.......))))))))....----------- ( -31.70, z-score = -4.42, R) >droGri2.scaffold_15252 6460337 113 - 17193109 CUUAAUACUUACAGCUGGGGCAUAUAAACAUGCGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGACACGAAUUGGUCACAAAAUAAUA------ .................(((((((....(.((((.((.(((((.....))))).)))))).)...)))))))..........(((((((.......)))))))..........------ ( -23.70, z-score = -2.15, R) >droMoj3.scaffold_6500 26203711 102 + 32352404 CUUAAUACCAUU------CGGCCAUAAACAUGCGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGACACGAAUUGGCCGCAAAA----------- ............------.(..(((((((.((((.((.(((((.....))))).)))))).).))))))..)...........((((((.......))))))......----------- ( -22.40, z-score = -1.50, R) >consensus CUUAAUACCGC__________GCAUAAACAUGAGAUUUAUCAUGGCAAAUGAUCAACGCACGAUUUAUGCUCAUUACAAAUAUGGCCAGCCACGAAUUGGCCGCAAAAAAA________ .....................((((((((.((.(.((.(((((.....))))).))).)).).)))))))............(((((((.......)))))))................ (-16.92 = -16.93 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:09 2011