| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,472,331 – 18,472,405 |
| Length | 74 |
| Max. P | 0.998135 |
| Location | 18,472,331 – 18,472,405 |
|---|---|
| Length | 74 |
| Sequences | 14 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 93.23 |
| Shannon entropy | 0.16879 |
| G+C content | 0.43089 |
| Mean single sequence MFE | -19.01 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.30 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18472331 74 + 23011544 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droSim1.chr2L 18161242 74 + 22036055 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droSec1.super_7 2098282 74 + 3727775 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droYak2.chr2R 4989130 74 + 21139217 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droEre2.scaffold_4845 16789946 74 - 22589142 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droAna3.scaffold_12916 2379492 74 + 16180835 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >dp4.chr4_group3 3636027 74 + 11692001 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droPer1.super_1 5116611 74 + 10282868 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droWil1.scaffold_180708 11623355 74 + 12563649 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droVir3.scaffold_12963 18451674 74 + 20206255 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droMoj3.scaffold_6500 26168035 74 - 32352404 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >droGri2.scaffold_15252 6428939 74 + 17193109 GUAUG-GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA-GUUUCACAAGUUUUGAUCUCCGGUAUUGG-- .....-.(..((..((.((((.(..(((((((((..((.......)-)..)))))))))..).)))).)).))..)-- ( -18.10, z-score = -2.12, R) >anoGam1.chr3R 43001871 76 - 53272125 GUAUCUGCUGAUUCCCUGAGACCCUAACUUGUGACUAUCGUUGCAAAGUUUCACAAGUUUUGAUCUCCGGUAUUAG-- .......(((((..((.((((.(..(((((((((....(........)..)))))))))..).)))).)).)))))-- ( -19.20, z-score = -3.00, R) >apiMel3.Group8 6734602 77 + 11452794 GCGUC-GCCGGUCCCCUGAGACCCUAACUUGUGACGUCGCGACCGAUAUCUCACAGGCUAGAUUCUCUGGUAUUGGCG ....(-((((((.((..((((..(((.(((((((.((((....))))...))))))).)))..)))).)).))))))) ( -29.80, z-score = -2.98, R) >consensus GUAUG_GCUGAUUCCCUGAGACCCUAACUUGUGACUUUUAAUACCA_GUUUCACAAGUUUUGAUCUCCGGUAUUGG__ .......(((((..((.((((.(..(((((((((................)))))))))..).)))).)).))))).. (-17.42 = -17.30 + -0.12)
| Location | 18,472,331 – 18,472,405 |
|---|---|
| Length | 74 |
| Sequences | 14 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 93.23 |
| Shannon entropy | 0.16879 |
| G+C content | 0.43089 |
| Mean single sequence MFE | -22.69 |
| Consensus MFE | -21.27 |
| Energy contribution | -21.24 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -3.41 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.27 |
| SVM RNA-class probability | 0.998135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18472331 74 - 23011544 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droSim1.chr2L 18161242 74 - 22036055 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droSec1.super_7 2098282 74 - 3727775 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droYak2.chr2R 4989130 74 - 21139217 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droEre2.scaffold_4845 16789946 74 + 22589142 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droAna3.scaffold_12916 2379492 74 - 16180835 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >dp4.chr4_group3 3636027 74 - 11692001 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droPer1.super_1 5116611 74 - 10282868 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droWil1.scaffold_180708 11623355 74 - 12563649 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droVir3.scaffold_12963 18451674 74 - 20206255 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droMoj3.scaffold_6500 26168035 74 + 32352404 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >droGri2.scaffold_15252 6428939 74 - 17193109 --CCAAUACCGGAGAUCAAAACUUGUGAAAC-UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC-CAUAC --......((.((((((..(((((((((..(-(.........)))))))))))..)))))).))........-..... ( -22.20, z-score = -3.49, R) >anoGam1.chr3R 43001871 76 + 53272125 --CUAAUACCGGAGAUCAAAACUUGUGAAACUUUGCAACGAUAGUCACAAGUUAGGGUCUCAGGGAAUCAGCAGAUAC --......((.((((((..(((((((((....(((...)))...)))))))))..)))))).)).............. ( -23.10, z-score = -3.94, R) >apiMel3.Group8 6734602 77 - 11452794 CGCCAAUACCAGAGAAUCUAGCCUGUGAGAUAUCGGUCGCGACGUCACAAGUUAGGGUCUCAGGGGACCGGC-GACGC ((((....((.((((..(((((.(((((....(((....)))..))))).)))))..))))..))....)))-).... ( -28.10, z-score = -1.93, R) >consensus __CCAAUACCGGAGAUCAAAACUUGUGAAAC_UGGUAUUAAAAGUCACAAGUUAGGGUCUCAGGGAAUCAGC_CAUAC ........((.((((((..(((((((((....((....))....)))))))))..)))))).)).............. (-21.27 = -21.24 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:06 2011