Locus 2374

Sequence ID dm3.chr2L
Location 18,457,919 – 18,457,993
Length 74
Max. P 0.716793
window3272

overview

Window 2

Location 18,457,919 – 18,457,993
Length 74
Sequences 5
Columns 80
Reading direction forward
Mean pairwise identity 89.38
Shannon entropy 0.18611
G+C content 0.51397
Mean single sequence MFE -24.57
Consensus MFE -21.80
Energy contribution -21.84
Covariance contribution 0.04
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.49
SVM RNA-class probability 0.716793
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 18457919 74 + 23011544
GCAGUGCAAUUAUUAAAUUCUCUGCGAACCGCAGAGA------AUUGCACUUGGUGGUUGUCGUUCUCUGGGCCGCUGGC
...(((((((........((((((((...))))))))------)))))))(..((((((...........))))))..). ( -26.20, z-score =  -2.21, R)
>droSim1.chr2L 18146502 79 + 22036055
GCAGUGCAAUUAUUAAAUUCUCUGCGAACCGCAGAGGCAUUCCAUUGCACUUGGUGAUUGUCGUUCUCUGG-CCGCUGGC
.(((((((((((((((...(((((((...)))))))(((......)))..))))))))))..((......)-)))))).. ( -24.40, z-score =  -1.27, R)
>droSec1.super_7 2079328 80 + 3727775
GCAGUGCAAUUAUUAAAUUCUCUGCGAACCGCAGAGGCAUUCCAUUGCACUUGGUGGUUGUCGUUCUCUGGGCCGCUGGC
...(((((((........((((((((...))))))))......)))))))(..((((((...........))))))..). ( -25.74, z-score =  -1.07, R)
>droYak2.chr2R 4974513 80 + 21139217
GCAGUGCAAUUAUUAAAUUCUCUGCGAACGGCAGGGGCAUUCCAUUGCACUUGGUGGUUGUCCCUCUCUCGGCCAUUUGC
((((.(.((((....))))).))))....((((((((((..(((((......))))).)))))))......)))...... ( -25.20, z-score =  -1.55, R)
>droEre2.scaffold_4845 16775140 80 - 22589142
GCAGUGCAAUUAUUAAAUUCUCUGCGAACCCCAGUGGCAUUCCAUUGCACUUGGUGGUUGUCCCUCUCUCGGCCAUUGGC
((((.(.((((....))))).)))).....((((((((...(((.......))).((....))........)))))))). ( -21.30, z-score =  -0.75, R)
>consensus
GCAGUGCAAUUAUUAAAUUCUCUGCGAACCGCAGAGGCAUUCCAUUGCACUUGGUGGUUGUCGUUCUCUGGGCCGCUGGC
((((((((((........(((((((.....)))))))......)))))))).(((((((...........))))))).)) (-21.80 = -21.84 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:04 2011