| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,392,212 – 18,392,305 |
| Length | 93 |
| Max. P | 0.857936 |
| Location | 18,392,212 – 18,392,305 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.22 |
| Shannon entropy | 0.50834 |
| G+C content | 0.40130 |
| Mean single sequence MFE | -16.17 |
| Consensus MFE | -10.24 |
| Energy contribution | -9.98 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18392212 93 + 23011544 ----------AAGGAAUCUCUCAUUUAUUUCCAAAAA-----CAUAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCAGCCAAUGAGGCGACACCAG ----------..((..(((((((((............-----..(((((((((.........)))).)))))..(((......)))......))))))).))..)).. ( -17.40, z-score = -1.57, R) >droEre2.scaffold_4845 16712667 92 - 22589142 ----------AAAGAAUCUUUCAUUUAUUUCCAAAA------UACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCAGCCAAUGAGGCGACAACAG ----------..........................------..(((((((((.........)))).))))).................(((.....)))........ ( -14.70, z-score = -1.08, R) >droYak2.chr2R 4909353 93 + 21139217 ----------AAAGAACCUCUCGUUUAUUUCCAAAAA-----UACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAACCAGCCAAUGAGGCGACAACGG ----------...........((((............-----..(((((((((.........)))).))))).................(((.....)))...)))). ( -16.90, z-score = -1.69, R) >droSec1.super_7 2018737 93 + 3727775 ----------AACGAAUCUCUAAUUUAUUUCCAAAAA-----CACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCAGCCAAUGAGGCGACAACAG ----------...........................-----..(((((((((.........)))).))))).................(((.....)))........ ( -14.70, z-score = -1.31, R) >droSim1.chr2L 18079762 93 + 22036055 ----------AACGAAUCUCUCAUUUAUUUCCAAAAA-----CACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAACCAGCCAAUGAGGCGACAACAG ----------......(((((((((............-----..(((((((((.........)))).)))))..((.((......)).))..))))))).))...... ( -15.80, z-score = -2.22, R) >droPer1.super_1 4393745 106 - 10282868 AACUAAUCUUUGU--UUAUUUUUUGUGUUGCAAAAACCUAUCCCCAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCAGCGAAUGAGACGGCAACAA .........((((--(.....(((((.((((...............)))).)))))....((((((.(((((..(((......))).)))))....)))))).))))) ( -21.56, z-score = -1.48, R) >dp4.chr4_group3 7286634 108 - 11692001 AACUAAUCUUUGUCUUUUUUUUUUGUGUUGUAAAAACCUAUCCCCAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCAGCGAAUGAGACGGCAACAA .........(((((.......(((((.((((...............)))).)))))......((((.(((((..(((......))).)))))....)))))))))... ( -20.66, z-score = -1.13, R) >droWil1.scaffold_180708 11510375 90 + 12563649 -------AACUGUCUUUAUUCUAACCAUUUCU----------C-UAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCGGCCAAUGAGGCAACAACUG -------...((((((........((......----------.-(((((((((.........)))).)))))..(((......)))..)).....))))))....... ( -14.12, z-score = -0.55, R) >droVir3.scaffold_12963 18344876 88 + 20206255 ----------AAAAUUCCUUUUAUACAUUGCC----------CACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUGAAGCCCGCCCAUGAGAAGACAGCAG ----------.......((((..((((.....----------..(((((((((.........)))).)))))....))))..))))...................... ( -13.40, z-score = -0.67, R) >droMoj3.scaffold_6500 27067202 87 + 32352404 -----------AUGGAAUUUUAUUUUACUAUC----------CACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCCGCCCAGGAGAAGACGACAG -----------................((.((----------(.(((((((((.........)))).)))))..(((......)))........)))..))....... ( -14.30, z-score = -0.69, R) >droGri2.scaffold_15252 6340555 88 + 17193109 --------ACUCAAUUUAUUUUAU--AUUUUC----------GACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUAUUGAAGCCCGCUCAUGAGAAAACAGCAG --------.((((...........--......----------..(((((((((.........)))).))))).........(((.(....)))))))).......... ( -14.30, z-score = -0.70, R) >consensus __________AAAGAAUCUUUUAUUUAUUUCCAAAA______CACAGCAAGACAAACAACUCGUCUAUGCUGAACUUGUACUAAAGCCAGCCAAUGAGGCGACAACAG ..................((((((....................(((((((((.........)))).)))))..(((......))).......))))))......... (-10.24 = -9.98 + -0.25)
| Location | 18,392,212 – 18,392,305 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 74.22 |
| Shannon entropy | 0.50834 |
| G+C content | 0.40130 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -14.20 |
| Energy contribution | -13.59 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18392212 93 - 23011544 CUGGUGUCGCCUCAUUGGCUGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUAUG-----UUUUUGGAAAUAAAUGAGAGAUUCCUU---------- ..((.(((..((((((.((((((((......))).)))))((((.((((........)))))))).-----............)))))).))).))..---------- ( -23.60, z-score = -0.94, R) >droEre2.scaffold_4845 16712667 92 + 22589142 CUGUUGUCGCCUCAUUGGCUGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUA------UUUUGGAAAUAAAUGAAAGAUUCUUU---------- (((..((((((.....))).)))..)))..((((..(((((.(((((((...))))))))))))..------.)))).....................---------- ( -23.70, z-score = -1.61, R) >droYak2.chr2R 4909353 93 - 21139217 CCGUUGUCGCCUCAUUGGCUGGUUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUA-----UUUUUGGAAAUAAACGAGAGGUUCUUU---------- ........(((((.(((....(((((.....((((.(((((.(((((((...)))))))))))).)-----)))...)))))...)))))))).....---------- ( -23.30, z-score = -1.23, R) >droSec1.super_7 2018737 93 - 3727775 CUGUUGUCGCCUCAUUGGCUGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUG-----UUUUUGGAAAUAAAUUAGAGAUUCGUU---------- (((..((((((.....))).)))..)))..((((..(((((.(((((((...))))))))))))..-----..)))).....................---------- ( -23.00, z-score = -1.01, R) >droSim1.chr2L 18079762 93 - 22036055 CUGUUGUCGCCUCAUUGGCUGGUUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUG-----UUUUUGGAAAUAAAUGAGAGAUUCGUU---------- .....(((..((((((.((((....)))).((((..(((((.(((((((...))))))))))))..-----..))))......)))))).))).....---------- ( -21.80, z-score = -0.71, R) >droPer1.super_1 4393745 106 + 10282868 UUGUUGCCGUCUCAUUCGCUGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGGGGAUAGGUUUUUGCAACACAAAAAAUAA--ACAAAGAUUAGUU (((((((((((((....(((.((....))...))).(((((.(((((((...))))))))))))))))).)))(((((.....)))))....)--))))......... ( -24.00, z-score = -0.32, R) >dp4.chr4_group3 7286634 108 + 11692001 UUGUUGCCGUCUCAUUCGCUGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGGGGAUAGGUUUUUACAACACAAAAAAAAAAGACAAAGAUUAGUU ((((.((((((((....(((.((....))...))).(((((.(((((((...))))))))))))))))).)))....))))........................... ( -23.00, z-score = -0.10, R) >droWil1.scaffold_180708 11510375 90 - 12563649 CAGUUGUUGCCUCAUUGGCCGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUA-G----------AGAAAUGGUUAGAAUAAAGACAGUU------- ...(((((......(((((((.((((((((((((..((((........)))))))))...))))-)----------))...)))))))......)))))..------- ( -20.90, z-score = -0.50, R) >droVir3.scaffold_12963 18344876 88 - 20206255 CUGCUGUCUUCUCAUGGGCGGGCUUCAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUG----------GGCAAUGUAUAAAAGGAAUUUU---------- ...((((((......)))))).(((..(((((.((.(((((.(((((((...))))))))))))..----------.))..)))))..))).......---------- ( -22.90, z-score = -0.67, R) >droMoj3.scaffold_6500 27067202 87 - 32352404 CUGUCGUCUUCUCCUGGGCGGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUG----------GAUAGUAAAAUAAAAUUCCAU----------- (((((((((......))))((((((......))))))((((.(((((((...)))))))))))...----------)))))................----------- ( -20.90, z-score = -0.94, R) >droGri2.scaffold_15252 6340555 88 - 17193109 CUGCUGUUUUCUCAUGAGCGGGCUUCAAUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUC----------GAAAAU--AUAAAAUAAAUUGAGU-------- ....(((((((........((((((......))))))((((.(((((((...)))))))))))...----------))))))--)...............-------- ( -17.80, z-score = -0.09, R) >consensus CUGUUGUCGCCUCAUUGGCUGGCUUUAGUACAAGUUCAGCAUAGACGAGUUGUUUGUCUUGCUGUG______UUUUGGAAAUAAAUAAAAGAUUCAUU__________ (((..((((.((....)).))))..)))........(((((.(((((((...))))))))))))............................................ (-14.20 = -13.59 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:59 2011