Locus 2367

Sequence ID dm3.chr2L
Location 18,383,220 – 18,383,318
Length 98
Max. P 0.639361
window3261

overview

Window 1

Location 18,383,220 – 18,383,318
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 96.84
Shannon entropy 0.05819
G+C content 0.50816
Mean single sequence MFE -30.26
Consensus MFE -26.44
Energy contribution -27.32
Covariance contribution 0.88
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.31
SVM RNA-class probability 0.639361
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 18383220 98 + 23011544
UUAGGACAGCGUGUCGAGUGUUGCAUGGAACGUGCCGUUUUUUGUUGCCCCUCUGGCGAAAGACAAUGCCUCGGAUUAUGCGAUACCGAAUACCCAGA
........(.((((((.(((((((((((..((.(.((((.(((.(((((.....))))).))).)))).).))..))))))))))))).)))).)... ( -30.90, z-score =  -1.91, R)
>droSim1.chr2L 18070876 98 + 22036055
UUAGGACAGCGUGUCGAGUGUUGCAUGGAACGUGCCGUUUUUUGUUGCCCCUCUGGCGAAAGACAAUGCCUCGGAUUAUGCGAUACCGAAUACCCAGA
........(.((((((.(((((((((((..((.(.((((.(((.(((((.....))))).))).)))).).))..))))))))))))).)))).)... ( -30.90, z-score =  -1.91, R)
>droSec1.super_7 2009810 98 + 3727775
UUAGGACAGCGUGUCGAGUGUUGCAUGGAACGUGCCGUUUUUUGUUGCCCCUCUGGCGAAAGACAAUGCCUCGGACUAUGCGAUACCGAAUACCCAGA
........(.((((((.(((((((((((..((.(.((((.(((.(((((.....))))).))).)))).).))..))))))))))))).)))).)... ( -33.10, z-score =  -2.50, R)
>droYak2.chr2R 4900290 98 + 21139217
UUAGGACAGCGUGUAGAGUGUUGCAUGGAACGUGCCGUUUUUUGUUGGCCCUCUGGCGAAAGACAAUACCUCGGAAAAUGCGAUACCGAAUACCCAGA
........(.((((.(.(((((((((((......))(((((((((..(....)..))))))))).............))))))))))..)))).)... ( -25.90, z-score =  -0.57, R)
>droEre2.scaffold_4845 16703542 98 - 22589142
UUAGGACAGCGUGUCGAGUGUUGCUUGGAACGUGCCGUUUUUUGUUGCCCCUCUGGCGAAAGACAAUGCCUCGGAUUAUGCGAUACCGAAUACCCUGA
......(((.((((((.(((((((.(((..((.(.((((.(((.(((((.....))))).))).)))).).))..))).))))))))).)))).))). ( -30.50, z-score =  -2.03, R)
>consensus
UUAGGACAGCGUGUCGAGUGUUGCAUGGAACGUGCCGUUUUUUGUUGCCCCUCUGGCGAAAGACAAUGCCUCGGAUUAUGCGAUACCGAAUACCCAGA
........(.((((((.(((((((((((..((.((.((((((((((........))))))))))...))..))..))))))))))))).)))).)... (-26.44 = -27.32 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:56 2011