| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,369,292 – 18,369,346 |
| Length | 54 |
| Max. P | 0.963682 |
| Location | 18,369,292 – 18,369,346 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 90.83 |
| Shannon entropy | 0.18404 |
| G+C content | 0.27778 |
| Mean single sequence MFE | -7.57 |
| Consensus MFE | -6.48 |
| Energy contribution | -6.30 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18369292 54 - 23011544 GUGCUUGAUUUAUUAUUAAAUCCGUACAUGGUUAUUAGUUUUUCUUUUCCUUUC ((((..((((((....)))))).))))........................... ( -7.30, z-score = -2.55, R) >droSim1.chr2L 18056959 54 - 22036055 GUGCUUGAUUUAUUAUUAAAUCCGUACAUGGUUAUUAGUUUUUCUUUUCCUUUC ((((..((((((....)))))).))))........................... ( -7.30, z-score = -2.55, R) >droSec1.super_7 1995972 54 - 3727775 GUGCUUGAUUUAUUAUUAAAUCCGUACAUGGUUAUUAGUUUUUCUUUUCCUUUC ((((..((((((....)))))).))))........................... ( -7.30, z-score = -2.55, R) >droYak2.chr2R 4886419 54 - 21139217 GUGCUUGAUUUAUUAUUAAAUCCGUACAUGGUUAUUAGUUUUUCUUUUCCCUCU ((((..((((((....)))))).))))........................... ( -7.30, z-score = -2.40, R) >droEre2.scaffold_4845 16689595 54 + 22589142 GUGUUUGAUUUAUUAUUAAAUCCGUACAUGGUUAUUAGUUUUUCUUUUCCUGCU ((((..((((((....))))))...))))......................... ( -5.70, z-score = -1.16, R) >droAna3.scaffold_12916 2283054 54 - 16180835 GUACUUGAUUUAUUAUUAAAUCCGUACAUGGUUAUUAGUUUUUCUUUUUGCCAU ((((..((((((....)))))).))))(((((....((.....))....))))) ( -11.80, z-score = -4.20, R) >droMoj3.scaffold_6500 27036885 54 - 32352404 GUACUUGAUUUAUUAUGAAAUCCGUACAUGGUUAUUAGUUUUUCAAAUGCUUUC (((.((((...((((......(((....)))....))))...)))).))).... ( -6.30, z-score = -0.61, R) >consensus GUGCUUGAUUUAUUAUUAAAUCCGUACAUGGUUAUUAGUUUUUCUUUUCCUUUC ((((..((((((....)))))).))))........................... ( -6.48 = -6.30 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:54 2011