| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,352,516 – 18,352,606 |
| Length | 90 |
| Max. P | 0.759789 |
| Location | 18,352,516 – 18,352,606 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 78.76 |
| Shannon entropy | 0.40722 |
| G+C content | 0.47981 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -19.11 |
| Energy contribution | -18.55 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.55 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18352516 90 - 23011544 UCGAAAGUUGCCGGAAUGCAAAGGAGGCAGCUUUGGCAUUGAAAGAGCAUUUGAAUGCGGUCGGUAGCAAAAAAAAAGGGGUAUGGGGCG ...(((((((((.............))))))))).(((((.(((.....))).)))))(.((.(((.(...........).))).)).). ( -22.72, z-score = -1.38, R) >droSim1.chr2L 18039549 81 - 22036055 UCGAAAGUUGCCGGAAUGCAAAGGAGGCAGCUUUGGCAUUGAAAGAGCAUUUGAAUGCGGUCGACAGCAAAAAAAGGGGUG--------- ((((((((((((.............))))))))..(((((.(((.....))).)))))..)))).................--------- ( -20.22, z-score = -0.78, R) >droSec1.super_7 1979008 81 - 3727775 UCGAAAGUUGCCGGAAUGCAAAGGAGGCAGCUUUGGCAUUGAAAGAGCAUUUGAAUGCGGUCGACAGCAAAAAAAGGGGUG--------- ((((((((((((.............))))))))..(((((.(((.....))).)))))..)))).................--------- ( -20.22, z-score = -0.78, R) >droYak2.chr2R 4870263 90 - 21139217 UCGAAAGUUGCCGGAAUGCAAAGAGGGCAGCUUUGGCAUUGAAACAGCAUUUGAAUGCGGUCGAGAAAAAAAGGGGUAUAGCCAGGGUUG ((((((((((((.............))))))))..(((((.(((.....))).)))))..))))..........((.....))....... ( -20.52, z-score = -0.14, R) >droEre2.scaffold_4845 16673545 90 + 22589142 UUGAAAGUUGCCGGAAUGCAAAGGAGGCAGCUUUGGCAUUGAAACAGCAUUUGAAUGCGGUCGACAAAAAAAGGGGCAUAGCAAGGGGUG ...(((((((((.............))))))))).(((((.(((.....))).))))).(((............)))............. ( -18.32, z-score = 0.48, R) >droAna3.scaffold_12916 2268791 70 - 16180835 UCGAAAGUUGUUGGAAUGCAAAGGAGGCAGCUUUGGCAUUGAAAGAGCAUUUGAAUGCGGUCGAGGAUCG-------------------- (((((.(((.((..(((((...((((....)))).)))))..)).))).)))))...(((((...)))))-------------------- ( -16.70, z-score = -0.67, R) >consensus UCGAAAGUUGCCGGAAUGCAAAGGAGGCAGCUUUGGCAUUGAAAGAGCAUUUGAAUGCGGUCGACAACAAAAAAAGGGGAG_________ ((((((((((((.............))))))))..(((((.(((.....))).)))))..)))).......................... (-19.11 = -18.55 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:52 2011