| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,340,927 – 18,341,030 |
| Length | 103 |
| Max. P | 0.736464 |
| Location | 18,340,927 – 18,341,030 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 66.58 |
| Shannon entropy | 0.61187 |
| G+C content | 0.56088 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -8.93 |
| Energy contribution | -9.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18340927 103 + 23011544 CUCUCGAUCCACUAACCCAUCAUGAGACCCCCCCCAAGAGCCCCUGGAUCACCCCUUUAGGC----AGUCAUUAAUGCGCCC-GCCAUGAUGAUGACUAUCUUAUGCU ....................(((((((............(((...((......))....)))----(((((((((((.(...-.))))..)))))))).))))))).. ( -20.60, z-score = -1.40, R) >droSec1.super_7 1967431 100 + 3727775 CUCUCGGUCCACUAACCCACCAUGAG---CCCCCCAAGAGCCGCUGGAUCCCCCCUUUAGGC----AGUCAUUAAUGCGCCC-GCCAUGAUGAUGACUAUCUUAUGCU .....(((......)))...((((((---..........(((...((......))....)))----(((((((((((.(...-.))))..))))))))..)))))).. ( -21.10, z-score = -0.41, R) >droYak2.chr2R 4858686 101 + 21139217 UCCUCAAUCCACUAACCCACCAUGAG--CCUCCCCCAAAUCCCCUGGAUCACCCCUUCAGGC----AGUCAUUAAUGCGCCC-GCCAUGAUGAUGACUAUCUUAUGCU ....................((((((--..............((((((.......)))))).----(((((((((((.(...-.))))..))))))))..)))))).. ( -18.00, z-score = -1.56, R) >droPer1.super_1 4326264 92 - 10282868 ---------CACCA--CCACCACCCUGCCCCCGCCCGCACCGCUGUGGCCCUCCCUUAAGGC----AGUCAUUAAUGCGCUC-GCCAUGAUGAUGACUAUCUUAUGCU ---------.....--((((..(..(((........)))..)..))))........((((..----(((((((((((.(...-.))))..))))))))..)))).... ( -19.30, z-score = -0.74, R) >droWil1.scaffold_180708 1114784 91 - 12563649 -------------CACUCACCAGCAUGCCCCAUGCCCCCCUACUGGCGUCUCCCCUCCCCGC----AGUCAUUAAUGCGCCUUGCCAUGAUGAUGACUAUCUUAUGCU -------------........((((((....(((((........))))).............----(((((((((((.((...)))))..))))))))....)))))) ( -19.00, z-score = -1.74, R) >droGri2.scaffold_15252 6282448 97 + 17193109 ---------CAUCCGUCCCCUGCCACUGCCCCCGCACGUCUACACACCCUCUCCGACUGGGCUGUGAGUCAUUAAUGCGCUC-GCCUUGUUGAUGACUAUCUU-UGCU ---------........................(((......(((((((.........))).))))((((((((((((....-))...)))))))))).....-))). ( -22.40, z-score = -1.46, R) >consensus _________CACUAACCCACCAUCAG_CCCCCCCCAAGACCCCCUGGAUCCCCCCUUUAGGC____AGUCAUUAAUGCGCCC_GCCAUGAUGAUGACUAUCUUAUGCU ...........................................................(((....(((((((((((.((...)))))..)))))))).......))) ( -8.93 = -9.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:51 2011