| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,340,775 – 18,340,873 |
| Length | 98 |
| Max. P | 0.900225 |
| Location | 18,340,775 – 18,340,873 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 82.09 |
| Shannon entropy | 0.33454 |
| G+C content | 0.45473 |
| Mean single sequence MFE | -37.19 |
| Consensus MFE | -19.58 |
| Energy contribution | -18.86 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.900225 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 18340775 98 - 23011544 GCAUUUGCGGCGCAAUUUAUAUGCAA-----GCGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAACGCGCGCGCUCUUGCCCCAAAUGCAAA--------------- (((((((.(((((((.((((((((((-----....)))).(((((---(.......))))))....)))))).))))...((....))....))).)))))))...--------------- ( -36.40, z-score = -2.15, R) >droSec1.super_7 1967279 98 - 3727775 GCAUUUGCGGCGCAAUUUAUAUGCAA-----GCGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAACGCGCGCGCUCUUGCCCCAAAUGCAAA--------------- (((((((.(((((((.((((((((((-----....)))).(((((---(.......))))))....)))))).))))...((....))....))).)))))))...--------------- ( -36.40, z-score = -2.15, R) >droYak2.chr2R 4858528 98 - 21139217 GCAUUUGCGGCGCAAUUUAUAUGCAA-----GCGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAACGCGCGCGCUCUUGCCCCAAAUGCAAA--------------- (((((((.(((((((.((((((((((-----....)))).(((((---(.......))))))....)))))).))))...((....))....))).)))))))...--------------- ( -36.40, z-score = -2.15, R) >droEre2.scaffold_4845 16661844 98 + 22589142 GCAUUUGCGGCGCAAUUUAUAUGCAA-----GCGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAACGCGCGCGCUCUUGCCCCAAAUGCAAA--------------- (((((((.(((((((.((((((((((-----....)))).(((((---(.......))))))....)))))).))))...((....))....))).)))))))...--------------- ( -36.40, z-score = -2.15, R) >droAna3.scaffold_12916 2257105 96 - 16180835 GCAUUUGCGGCGCAAUUUAUAUGCAA-----GCGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAA--CGCGCGCUCUUGCCCCAAAUGCAAA--------------- (((((((.((((((.......)))..-----(((.((((((((((---(.......)))))(((....)))..))))))--)))........))).)))))))...--------------- ( -34.90, z-score = -2.52, R) >dp4.chr4_group3 7218617 97 + 11692001 GCAUUUGCGGCGCAAUUUAUAUGCAA-----GCGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAG-ACGAGCGCGCGGAUUCCUCAUGCAAA--------------- (((((((((((((((.((((((((((-----....)))).(((((---(.......))))))....)))))).))))..-....)).)))))).......)))...--------------- ( -26.71, z-score = 0.83, R) >droPer1.super_1 4326090 112 + 10282868 GCAUUUGCGGCGCAAUUUAUAUGCAA-----GCGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAG-ACGAGCGCGCGGAUUCCUCAUGCUCUUGCCCCAAAUGCAAA (((((((.(((((((.((((((((((-----....)))).(((((---(.......))))))....)))))).))))..-..(((((.(.((...)).).)))))..))).)))))))... ( -42.40, z-score = -3.00, R) >droWil1.scaffold_180708 1114639 95 + 12563649 GCAUUUGCGGCUCAAUUUAUAUGCAA------CGAUUGCAAUGCG---UGCACAAAACGCAUACAAAUGUAAUUUGCAGCGCGAG-GCUCUC-UCCCAAAUGCAAA--------------- (((((((.(((((((.(((((((((.------....))).(((((---(.......))))))....)))))).))).)))..(((-.....)-))))))))))...--------------- ( -28.20, z-score = -1.61, R) >droVir3.scaffold_12963 18269940 100 - 20206255 GCAUUUGUGGCGCAAUUUAUAUGCAGCGAUUGCAAUUGCAAUGCGUGCUGCACAAAACGCAUACAAAUGUAAUUUGUGCAGUGCGCGC------UCCAAAUGCAAA--------------- (((((((..((((............((.(((((....)))))))(..(((((((((..((((....))))..)))))))))..)))))------..)))))))...--------------- ( -48.20, z-score = -5.39, R) >droMoj3.scaffold_6500 26997326 98 - 32352404 GCAUUUGUGGCGCAAUUUAUAUGCAGCGAUUGCAAUUGCAAUGCGUGGUGCACAAAAUGCAUACAAAUGUAAUUUGUGCA--CAGCGC------UUCGAAUGCAAA--------------- (((((((.(((((......(((((((((((....)))))..))))))(((((((((.(((((....))))).))))))))--).))))------).)))))))...--------------- ( -45.40, z-score = -5.08, R) >droGri2.scaffold_15252 6282311 98 - 17193109 GCAUUUGCGGUGCAAUUUAUAUGCAGCGAUUGCAAUUGCAAUGCGUGGUGCACAAAACGCAUACAAAUGUAAUUUGUGCU--CAGCGC------UCCAAAUGCAAA--------------- (((((((.(((((......(((((((((((....)))))..))))))(.(((((((..((((....))))..))))))).--).))))------).)))))))...--------------- ( -37.70, z-score = -2.74, R) >consensus GCAUUUGCGGCGCAAUUUAUAUGCAA_____GCGAUUGCAAUGCG___UGCACAAAACGCAUACAAAUGUAAUUUGCAACGCGCGCGCUCUUGCCCCAAAUGCAAA_______________ (((((((.(((((........(((((.....(((.(((..(((((............))))).))).)))...)))))......))))......).))))))).................. (-19.58 = -18.86 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:50 2011