| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,299,356 – 18,299,418 |
| Length | 62 |
| Max. P | 0.784049 |
| Location | 18,299,356 – 18,299,418 |
|---|---|
| Length | 62 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 84.95 |
| Shannon entropy | 0.21405 |
| G+C content | 0.37097 |
| Mean single sequence MFE | -15.30 |
| Consensus MFE | -11.77 |
| Energy contribution | -11.67 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18299356 62 - 23011544 UAGUAUACCCUUUAUUUUAUGAAUAGCGGGUAUAAAAAUACCGCCUCUGGCCGUAAAGUAUU ...(((((((.((((((...)))))).)))))))....(((.(((...))).)))....... ( -15.60, z-score = -2.02, R) >droSim1.chr2L 17985709 62 - 22036055 UACUAUACCCUUUAUUUUGAGAGUAGCGCGUAUAAAAAUACCGCCUCUGGCCGUAAAGUAUU .........((((((..(.((((..(((.((((....))))))))))).)..)))))).... ( -14.00, z-score = -2.09, R) >droYak2.chr2R 4816739 62 - 21139217 UAAUAUCCCAUUUACUCUUAGAGUAGGGGGUAUAAAAAUACCUCCUCUGGACGUAACGUAUU .......(((..(((((...)))))((((((((....))))))))..)))............ ( -16.30, z-score = -1.72, R) >consensus UAAUAUACCCUUUAUUUUAAGAGUAGCGGGUAUAAAAAUACCGCCUCUGGCCGUAAAGUAUU ...(((((((.((((((...)))))).)))))))....(((.(((...))).)))....... (-11.77 = -11.67 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:47 2011