| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,294,553 – 18,294,649 |
| Length | 96 |
| Max. P | 0.726534 |
| Location | 18,294,553 – 18,294,649 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 65.42 |
| Shannon entropy | 0.61350 |
| G+C content | 0.52143 |
| Mean single sequence MFE | -23.31 |
| Consensus MFE | -10.44 |
| Energy contribution | -10.68 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18294553 96 + 23011544 CCUGCGAAGGUAAACUGCACGCGUCUGAA----AACAAAAGCAAGCAUGUUGCCGCUAGGUGGCGACACCGUGCAGACAAUUAAACGCAACAACAGCCAC ..((((........((((((((...((..----..))...)).....(((((((((...)))))))))..)))))).........))))........... ( -27.63, z-score = -0.77, R) >droSec1.super_7 1921132 74 + 3727775 -------------CCUGCAAAGGU---AA----AACAACAGCAAGCAUGUUGCCGCUAGGUGGCGACACCGUGCAGUCAAUUAAACGCAACAAC------ -------------.(((((..(((---..----.......(....)..((((((((...))))))))))).)))))..................------ ( -19.70, z-score = -0.72, R) >droYak2.chr2R 4812027 73 + 21139217 -----------------------UCUGAG----AACAACAACAAACACGUUGCCGCUAGGUGGCGACACCGUACAGGCAAUCAGACUCAACAACAGCCAC -----------------------(((((.----......(((......)))(((....((((....)))).....)))..)))))............... ( -18.30, z-score = -2.00, R) >droEre2.scaffold_4845 16615563 95 - 22589142 CCUGCAAGAGUAAGCUCCAUGCAUCUGAG----AACAACAACAGACACGUUGCCGCUAGGUGGCGACACCGUACAG-CAAUCAAACUCAACAACAGCCAC ..((((.(((....)))..))))..((((----.....((((......))))..(((.((((....))))....))-).......))))........... ( -22.70, z-score = -1.20, R) >droAna3.scaffold_12916 2217240 100 + 16180835 CCUGUAACGGUAAAUUGCAUUCACAGGAGCAGGAACAGGAACAACUAGCACGCCGCUAGGUGGCGACACCGUACAGGCAAUCAAACUCGGCGGAGGCAAC (((((..(.((...(((......)))..)).)..)))))........((...(((((.((((....))))((....))..........)))))..))... ( -28.20, z-score = -1.31, R) >consensus CCUG__A__GUAAACUGCAUGCAUCUGAG____AACAACAACAAACACGUUGCCGCUAGGUGGCGACACCGUACAGGCAAUCAAACUCAACAACAGCCAC ................................................((((((((...))))))))................................. (-10.44 = -10.68 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:46 2011