| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,255,394 – 18,255,488 |
| Length | 94 |
| Max. P | 0.650477 |
| Location | 18,255,394 – 18,255,488 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.30 |
| Shannon entropy | 0.41573 |
| G+C content | 0.48262 |
| Mean single sequence MFE | -19.01 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.89 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18255394 94 - 23011544 CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCCAACGCCUCUGGC-ACGUCGCUAACUCUCAGUCCCU (((((...((((((...)))))).)))))..(..((((.((((......))))..........(((...)))-))))..)............... ( -19.00, z-score = -1.59, R) >droSim1.chr2L 17939741 94 - 22036055 CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCCAACGCCUCUGGC-ACGUCGCUAACUCUCAGUCCCU (((((...((((((...)))))).)))))..(..((((.((((......))))..........(((...)))-))))..)............... ( -19.00, z-score = -1.59, R) >droSec1.super_7 1881554 94 - 3727775 CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCCAACGCCUCUGGC-ACGUCGCUAACUCUCAGUCCCU (((((...((((((...)))))).)))))..(..((((.((((......))))..........(((...)))-))))..)............... ( -19.00, z-score = -1.59, R) >droYak2.chr2R 4767032 94 - 21139217 CUACACUCGACGAUAAAAUCGUCAUGUUGUCGUAAUGUCUGCAUCAAAUUGCAUUUUCCCAACGCCUCUGGC-ACGUCGCUAACUCUCAGUCCCU ........((((((...))))))..((((..(..((((.((((......))))..........(((...)))-))))..)))))........... ( -16.60, z-score = -1.34, R) >droEre2.scaffold_4845 16576199 94 + 22589142 CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCCAACGCCUCUGGC-ACCUCGCUGACUCCCAGACCCU .((((...((((((...)))))).))))(((.....(((.((........((....)).....(((...)))-.....)).))).....)))... ( -20.20, z-score = -1.83, R) >droAna3.scaffold_12916 2181626 94 - 16180835 CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUCGCCCAACGCCUCUGGC-ACGUCGCUAACUCUCAGUCCCC (((((...((((((...)))))).)))))..(..((((.((((......))))..........(((...)))-))))..)............... ( -19.00, z-score = -1.71, R) >dp4.chr4_group3 7114003 91 + 11692001 CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCCAGCGUCGUCGAG-GAGCAGCCA---CAGAGUUCCU ......((((((((.........((((((.(.....).))))))......((....)).....))))))))(-((((.....---....))))). ( -22.50, z-score = -1.07, R) >droPer1.super_1 4221215 91 + 10282868 CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCCAGCGUCGUCGAG-GAGCUGCCA---CAGAGUUCCU ......((((((((.........((((((.(.....).))))))......((....)).....))))))))(-(((((....---...)))))). ( -24.30, z-score = -1.47, R) >droWil1.scaffold_180708 11336260 88 - 12563649 CUACACUUGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCGGAACGCCUCCGCCUUCGCCUUCAUUCCAC------- (((((..(((((((...))))))))))))..(.((((..((((......))))...(((((.....))))).........)))).)..------- ( -22.70, z-score = -3.21, R) >droGri2.scaffold_15252 11013935 90 + 17193109 CAACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCAUAACCCACGACCAUCCCCAGCGCCACCCCU----- ........((((((...)))))).....(((((.(((.(((((......))))...).))).....)))))...................----- ( -13.50, z-score = -1.27, R) >droMoj3.scaffold_6500 5487250 87 + 32352404 CAACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCAACGCCCCCUAACAACCGCCUCGUGCCU-------- ...(((..((((((...))))))((((((.(.....).)))))).....................................)))...-------- ( -13.30, z-score = -0.61, R) >consensus CUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAAAUUGCAUUUGCCCAACGCCUCUGGC_ACGUCGCUAACUCUCAGUCCCU ........((((((...))))))((((((.(.....).))))))................................................... (-10.80 = -10.89 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:45 2011