| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,767,306 – 1,767,406 |
| Length | 100 |
| Max. P | 0.656279 |
| Location | 1,767,306 – 1,767,406 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 87.92 |
| Shannon entropy | 0.21519 |
| G+C content | 0.46622 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -23.14 |
| Energy contribution | -23.53 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1767306 100 - 23011544 CGUGGGAGGUU--CCAAGGUCCUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU .((((((((..--(....).))))..(((((((...(((((((((((((..-----------....)))))((((((...))))))...)))))))).))))))).))))... ( -32.80, z-score = -2.22, R) >droSim1.chr2L 1754202 100 - 22036055 CGUGGGAGGUU--CCAAGGUCCUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU .((((((((..--(....).))))..(((((((...(((((((((((((..-----------....)))))((((((...))))))...)))))))).))))))).))))... ( -32.80, z-score = -2.22, R) >droSec1.super_14 1701785 100 - 2068291 CGUAGGAGGUU--CCAAGGUCCUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU .....((((..--(....).))))(((((((((...(((((((((((((..-----------....)))))((((((...))))))...)))))))).))))))).))..... ( -29.90, z-score = -1.73, R) >droYak2.chr2L 1740578 95 - 22324452 CGUGGGAGGUU--CCAAGGUCCUCGGGGAAAUUGAAAAUGAGAGCG----------------GACCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU .((((((((..--(....).))))..((((((((((((((...(((----------------((...)))))(((((...)))))..))))))))....)))))).))))... ( -31.40, z-score = -2.18, R) >droEre2.scaffold_4929 1811562 111 - 26641161 CGUGGGAGGUU--CCAAGGUCCUCGGGGAAAUUGAAACUGAGAACGAUAAGGAGAAGGACAAGGUCCUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU .((((((((..--(....).))))..(((((((.....((((((.........(((((((...)))))))(((((((...)))))).).))))))...))))))).))))... ( -37.30, z-score = -2.48, R) >droAna3.scaffold_12916 361646 101 + 16180835 CGUGGGAGGUUGGCCAAGGUCCUUGGGGAAAUUGAAAAUGAGCAUGAGAA------------GGUCCUUCUCGCAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCAUCCCC ...((((.((...(((((...)))))((((((((((((((.....(((((------------(...))))))(((((...)))))..))))))))....)))))))).)))). ( -32.40, z-score = -1.25, R) >consensus CGUGGGAGGUU__CCAAGGUCCUCGGGGAAAUUGAAAAUGAGAACGAGAAG___________GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU .((((((((...........))))..((((((((((((((......................(......).((((((...)))))).))))))))....)))))).))))... (-23.14 = -23.53 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:06 2011