| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,214,149 – 18,214,249 |
| Length | 100 |
| Max. P | 0.878280 |
| Location | 18,214,149 – 18,214,249 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 68.40 |
| Shannon entropy | 0.61454 |
| G+C content | 0.36652 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -8.10 |
| Energy contribution | -8.25 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878280 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 18214149 100 - 23011544 -UCUUUCUGGGUACAUUUUAGCUGCUUUCU------CUGGUAAAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAGCAACGCAAAA------ -......(((((.(((((((.(........------..).))))))))))))(((((((((((.....))))))).-..((((((.......-.))))))...))))..------ ( -24.40, z-score = -2.54, R) >droEre2.scaffold_4845 16533358 88 + 22589142 -UCUGUCUGAGCACAUUUUAGCUG------------------AAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAGCAACGCAAAA------ -.........((.((((((....)------------------))))).......(((((((((.....))))))).-))((((((.......-.))))))...))....------ ( -21.40, z-score = -1.51, R) >droYak2.chr2R 4720327 88 - 21139217 -UCUUUCUGAGCACAUUUUAGCUG------------------AAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAGCAACGCAAAA------ -((((((..(((........))))------------------))).))....(((((((((((.....))))))).-..((((((.......-.))))))...))))..------ ( -21.60, z-score = -1.93, R) >droSec1.super_7 1839806 100 - 3727775 -UCUUCCUGAGUACAUUUUAGCUGCUUUCU------CUGGCGAAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAGCAACGCAAAA------ -......(((((.((((((.(((.......------..))))))))))))))(((((((((((.....))))))).-..((((((.......-.))))))...))))..------ ( -25.30, z-score = -2.34, R) >droSim1.chr2L 17892932 100 - 22036055 -UCUUCCUGAGUACAUUUUAGCUGCUUUCU------CUGGCGAAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAGCAACGCAAAA------ -......(((((.((((((.(((.......------..))))))))))))))(((((((((((.....))))))).-..((((((.......-.))))))...))))..------ ( -25.30, z-score = -2.34, R) >dp4.chr4_group3 7063940 98 + 11692001 --UCUCCUAAGUAGAUUUUUUUCG-------------UGCUGAAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAGCAGCGCCCAAAGAGAU --((((.......((......))(-------------((((.............(((((((((.....))))))).-))((((((.......-.))))))))))).....)))). ( -26.10, z-score = -2.77, R) >droPer1.super_1 4170243 98 + 10282868 --UCUCCUAAGUAGAUUUUUUUCG-------------UGCUGAAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAGCAGCGCCCAAAGAGAU --((((.......((......))(-------------((((.............(((((((((.....))))))).-))((((((.......-.))))))))))).....)))). ( -26.10, z-score = -2.77, R) >droAna3.scaffold_12916 2142084 110 - 16180835 UCCUCCCGGACGACCCUCCGGCGGCUCUGUGUUCUGAUGCUAAAAUGAUUUAUUGCGUAAAUUUUAUUAAUUUGCU-GCGCUGUCAUAAAAA-CGACAACGCUGCGCAGAAA--- .((..(((((......))))).)).(((((((........................(((((((.....))))))).-(((.((((.......-.)))).))).)))))))..--- ( -29.20, z-score = -2.02, R) >droVir3.scaffold_12963 18076263 80 - 20206255 --------UGC-GCAUUUUUAUGC-----------GCUUUGCCAAUGAUUUAUUGCGAAAAUUUCAUUAAUUUGCU-GCGCUGUCAUAAAACAGGGCAACA-------------- --------.((-((((....))))-----------)).(((((...........(((.(((((.....)))))..)-)).((((......)))))))))..-------------- ( -21.90, z-score = -1.48, R) >droMoj3.scaffold_6500 26785405 79 - 32352404 --------UGC-ACGUUUUUAUUC-----------GUUUUCCCAAUGAUUUAUUGCAAAAAUUUCAUUAAUUCGCU-GCUUUGUCAUAAAAC-UCGCAACA-------------- --------(((-(((........)-----------)).......(((((.....(((..((((.....))))...)-))...))))).....-..)))...-------------- ( -8.40, z-score = -0.01, R) >droGri2.scaffold_15252 6121364 87 - 17193109 --------GGCGGCGUUUUUAUUC-----------GCAUUGCCAAUGAUUUAUUACAGAAAUUUCAUUAAUUUGCUGGCGCUGUCAUAAAAC--AGCAACAAGCAAUA------- --------(((.(((........)-----------))...)))(((((...(((.....))).)))))...((((((..(((((......))--)))..).)))))..------- ( -21.30, z-score = -1.66, R) >consensus __CUUCCUGAGUACAUUUUAGCUG____________CUGCUGAAAUGAUUUAUUGCGUAAAUUUCAUUAAUUUGCU_GCGCUGUCAUAAAAA_CGACAGCAACGCAAAA______ ...........................................(((((...(((.....))).)))))...........((((((.........))))))............... ( -8.10 = -8.25 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:34 2011