| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,190,034 – 18,190,117 |
| Length | 83 |
| Max. P | 0.925835 |
| Location | 18,190,034 – 18,190,117 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 77.15 |
| Shannon entropy | 0.42969 |
| G+C content | 0.40857 |
| Mean single sequence MFE | -17.91 |
| Consensus MFE | -10.73 |
| Energy contribution | -10.98 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18190034 83 - 23011544 ACUAAACAAAUGAGCGCUGCAUAAGCACAACAGACGCACACAAAGGACGCCUGGGAUA----UAUAUAUCCUGGAAUAUCCUUGUGG .............((((((...........))).))).(((((.(((...(..(((((----....)))))..)....)))))))). ( -22.70, z-score = -3.07, R) >droSim1.chr2L 17868729 83 - 22036055 ACUAAACAAAUGAGCGCUGCAUAAGCACAACAGACGCACACAAAGGACGCCUGGGAUA----UACAUAUCCUGGAAUAUCCUUGUGG .............((((((...........))).))).(((((.(((...(..(((((----....)))))..)....)))))))). ( -22.70, z-score = -3.11, R) >droSec1.super_7 1815601 83 - 3727775 ACUAAACAAAUGAGCGCUGCAUAAGCACAACAGACGCACACAAAGGACGCCUGGGAUA----UACAUAUCCUGGAAUAUCCUUGUGG .............((((((...........))).))).(((((.(((...(..(((((----....)))))..)....)))))))). ( -22.70, z-score = -3.11, R) >droYak2.chr2R 4695749 87 - 21139217 ACUAAACAAAUGAGCACUGCAUAAGCUCAAAAGACGCACACAAAGAACGCUUUGGAUAUAUGUACAUAUCCUGAAAUAUCCUUGUGG ..........(((((.........))))).........(((((.((.......((((((......)))))).......)).))))). ( -17.34, z-score = -2.02, R) >droEre2.scaffold_4845 16509096 83 + 22589142 ACUAAACAAAUGAGCGCUGCAUAAGCACAAAAGACGCACACAAAGAACGCUUGGGAUA----UACAUGUCCUGGAAUAUCCUUGUGG .............(((((((....)).....)).))).(((((.((....(..(((((----....)))))..)....)).))))). ( -17.20, z-score = -1.07, R) >droGri2.scaffold_15252 6093167 65 - 17193109 -------------GCGUUGCAUAUACACAAUAAAUG-GCAAAAAGA----UUAAGAUU----CGUUUUUUUUUUAUUUUUCCUGAAG -------------............((....(((((-(.(((((((----(.......----.)))))))).))))))....))... ( -4.80, z-score = 1.06, R) >consensus ACUAAACAAAUGAGCGCUGCAUAAGCACAACAGACGCACACAAAGAACGCCUGGGAUA____UACAUAUCCUGGAAUAUCCUUGUGG .............(.(((.....))).)..........(((((.((....((((((((........))))))))....)).))))). (-10.73 = -10.98 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:31 2011