| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,177,486 – 18,177,596 |
| Length | 110 |
| Max. P | 0.999218 |
| Location | 18,177,486 – 18,177,596 |
|---|---|
| Length | 110 |
| Sequences | 10 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.83 |
| Shannon entropy | 0.61957 |
| G+C content | 0.28423 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -11.54 |
| Energy contribution | -12.54 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.58 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.72 |
| SVM RNA-class probability | 0.999218 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 18177486 110 + 23011544 -CAAAUCAAUAAAUAUUUGAUUAUAUUUGUUGAUUUGCAAUUAUUUGGUUGGAUGUAA--UGUAUAAAUUACAAAUCGCCAAUCAAUGCGUUCAACCAGAAAUGCGAAAUAAA -.((((((((((((((......))))))))))))))(((....(((((((((((((((--(......))))))...(((........)))))))))))))..)))........ ( -31.60, z-score = -4.60, R) >droSim1.chr2L 17855486 110 + 22036055 -CAAAUCAAUAAAUAUUUGAUUAUAUUUGUUGAUUUGCAAUUAUUUGGUUGGAUGUAA--UGUAUAAAUUACAAAUCGCCAAUCAAUGCGUUCAACCAGAAAUGCGAAAUAAA -.((((((((((((((......))))))))))))))(((....(((((((((((((((--(......))))))...(((........)))))))))))))..)))........ ( -31.60, z-score = -4.60, R) >droSec1.super_7 1802985 110 + 3727775 -CAAAUCAAUAAAUAUUUGAUUAUAUUUGUUGAUUUGCAAUUAUUUGGUUGGAUGUAA--UGUAUAAAUUACAAAUCGCCAAUCAAUGCGUUCAACCAGAAAUGCGAAAUAAA -.((((((((((((((......))))))))))))))(((....(((((((((((((((--(......))))))...(((........)))))))))))))..)))........ ( -31.60, z-score = -4.60, R) >droYak2.chr2R 4682988 110 + 21139217 -CAAAUCAAUAAAUAUUUGAUUAUAUUUGUUGAUUUGCAAUUAUUUGGUUGGGUGUAA--UGUAUAAAUUAGAAAUCGCCAAUCAAUGCGUUCAACCAGAAAUGCGAAAUAAA -.((((((((((((((......))))))))))))))(((....((((((((..((((.--((.....................)).))))..))))))))..)))........ ( -29.80, z-score = -3.91, R) >droEre2.scaffold_4845 16496083 110 - 22589142 -CAAAUCAAUAAAUAUUUGAUUAUAUUUGUUGAUUUGCAAUUAUUUGGCUGGGUGUAA--UGUAUAAAUUACAAAUCGCCAAUCAAUGCGUUCAACCAGAAAUGCGAAAUAAA -(((((((((((((((......)))))))))))))))..(((..(((((.(..(((((--(......))))))..).)))))..)))(((((........)))))........ ( -30.00, z-score = -3.77, R) >droAna3.scaffold_12916 2106965 110 + 16180835 -CGAAUCAAUAAAUAUUUGAUUAUAAUUGUUGAUUUGAAAUUAUUUGGUCGAAUGUAA--UGAAUAAAUAACAAAUCGCCAAUCAAUGCAUUCAACCAGAAAUGUGGAUCACG -(((((((((((.(((......))).)))))))))))......((((((.(((((((.--(((...................))).))))))).))))))...(((...))). ( -25.81, z-score = -2.65, R) >dp4.chr4_group3 7022875 110 - 11692001 -CAAAUCAAUAAAUAUUUGAUUAUAAUUGUUGAUUUACAAUUAUUUGGUCGCACGGAA--UGAAUAAACAACAAAUUGCCGAGCAAUUUGUUCGGCCUAAAAGUACAAAUAAA -............((((((.......((((((.((((...((((((.(.....).)))--))).))))))))))...(((((((.....))))))).........)))))).. ( -24.60, z-score = -2.91, R) >droPer1.super_1 4127950 111 - 10282868 CCAAAUCAAUAAAUAUUUGAUUAUAAUUGUUGAUUUACAAUUAUUUGGUCGCACGGAA--UGAAUAAACAACAAAUUGCCGAGCAAUUUGUUCGGUCUAAAAGUACAAAUAAA ..((((((((((.(((......))).))))))))))....(((((((..(....(((.--(((.......(((((((((...)))))))))))).)))....)..))))))). ( -22.71, z-score = -2.27, R) >droGri2.scaffold_15252 11111444 96 - 17193109 -CACAAAACUAAAUCGUU--UUAUGUCACUUAGUUAAUGAUAAACAAGUCAGCAUGCG--CUGGUCGAGAGGCUUCUAAUAGGAAAUACCCUGAAUUCAGC------------ -...(((((......)))--))((((.((((.(((.......)))))))..))))..(--((((((....)))......((((......))))....))))------------ ( -16.60, z-score = 0.08, R) >droMoj3.scaffold_6500 5620730 108 - 32352404 -CCAAUCAAUAAAUAUUUGAUUAUAAUUGUUGAUUAAUUAUUAUUUGGUCAGCAACAACCUGCAUAAAUUAUGCGACAGCAGCAGCAGCAAU-AAUUGAAAUAAAUAUAU--- -..............((..(((((..(((((((((((.......)))))))))))....((((........(((....)))...))))..))-)))..))..........--- ( -20.30, z-score = -1.05, R) >consensus _CAAAUCAAUAAAUAUUUGAUUAUAUUUGUUGAUUUGCAAUUAUUUGGUCGGAUGUAA__UGUAUAAAUUACAAAUCGCCAAUCAAUGCGUUCAACCAGAAAUGCGAAAUAAA ..((((((((((.(((......))).))))))))))..........(((((((((((.............................)))))))))))................ (-11.54 = -12.54 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:30 2011