| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,175,487 – 18,175,544 |
| Length | 57 |
| Max. P | 0.565846 |
| Location | 18,175,487 – 18,175,544 |
|---|---|
| Length | 57 |
| Sequences | 7 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 66.69 |
| Shannon entropy | 0.61460 |
| G+C content | 0.36756 |
| Mean single sequence MFE | -11.10 |
| Consensus MFE | -4.48 |
| Energy contribution | -4.44 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18175487 57 - 23011544 ---UAUAUAUAGUUCUUCGACUUGCAGUU-GACGAGUCAAGAACAGGAGG-AAAUUAAGCCU ---........((((((.(((((((....-).))))))))))))...(((-........))) ( -14.90, z-score = -2.61, R) >droPer1.super_1 4125543 62 + 10282868 UUCAAGAAUUUCUUGUCCUGCUUGCAAUCAAAUUGGUCAAAAGGGAAAGGUCUAAUAAGGUA ..((((.....))))((((..(((..(((.....))))))..))))................ ( -7.80, z-score = 0.68, R) >dp4.chr4_group3 7020446 62 + 11692001 UUCAAGAAUUUCUUGUCCUGCUUGCAAUCAAAUUGGUCAAAAGGGAAAGGUCUAAUAAGGUA ..((((.....))))((((..(((..(((.....))))))..))))................ ( -7.80, z-score = 0.68, R) >droSim1.chr2L 17853381 56 - 22036055 ----AUAUUUAGUUCUUCGACUUGCAAUU-GACGAGUCAAGAACAGGAGG-AAAUUAAGCCA ----.......((((((.(((((((....-).))))))))))))....((-........)). ( -14.80, z-score = -2.94, R) >droSec1.super_7 1800882 56 - 3727775 ----AUAUAAAGUUCUUCGACUUGCAAUU-GACGAGUCAAGAACAGGAGG-AAAUUAAGCCA ----.......((((((.(((((((....-).))))))))))))....((-........)). ( -14.80, z-score = -3.12, R) >droYak2.chr2R 4681222 55 - 21139217 ----ACAUAUAGUUUCUUGACUUGCAAUU-GAUGAGUCGAGAACAGGAGU-AAA-UAAGCCA ----.......(((.((((((((((....-).)))))))))))).((..(-...-.)..)). ( -11.60, z-score = -1.65, R) >droEre2.scaffold_4845 16494267 55 + 22589142 ----AUAUAUAGUCCAUCGACUUGCAA-U-GAAGAGCCUAGAAUACGAGG-AAAUUAAGCAA ----......((((....))))(((..-.-.((...(((........)))-...))..))). ( -6.00, z-score = 0.03, R) >consensus ____AUAUAUAGUUCUUCGACUUGCAAUU_GACGAGUCAAGAACAGGAGG_AAAUUAAGCCA ...........((((...((((((........))))))..)))).................. ( -4.48 = -4.44 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:29 2011