| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,168,385 – 18,168,478 |
| Length | 93 |
| Max. P | 0.963508 |
| Location | 18,168,385 – 18,168,478 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 97.87 |
| Shannon entropy | 0.02931 |
| G+C content | 0.51956 |
| Mean single sequence MFE | -18.57 |
| Consensus MFE | -18.55 |
| Energy contribution | -18.55 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18168385 93 + 23011544 CGCCUUAGGGUUUUCCUCUUUUCCCUUUCGCAUUUUCCUUUUCCCCCAGCGAGCAUCCACUGCCCC-UUCACACUGAUUUGGAUCCCGCUGAAU .((...((((............))))...))...............(((((.(.(((((.......-............))))).))))))... ( -18.61, z-score = -1.90, R) >droSim1.chr2L 17846240 94 + 22036055 CGCCUUAGGGUUUUCCUCUUUUCCCUUUCGCAUUUUCCUUCUUCCCCAGCGAGCAUCCACUGCCCCCUUCACACUGAUUUGGAUCCCGCUGAAU .((...((((............))))...))...............(((((.(.(((((....................))))).))))))... ( -18.55, z-score = -1.81, R) >droSec1.super_7 1793737 94 + 3727775 CGCCUUAGGGUUUUCCUCUUUUCCCUUUCGCAUUUUCCUUUUCCCCCAGCGAGCAUCCACUGCCCCCUUCACACUGAUUUGGAUCCCGCUGAAU .((...((((............))))...))...............(((((.(.(((((....................))))).))))))... ( -18.55, z-score = -1.93, R) >consensus CGCCUUAGGGUUUUCCUCUUUUCCCUUUCGCAUUUUCCUUUUCCCCCAGCGAGCAUCCACUGCCCCCUUCACACUGAUUUGGAUCCCGCUGAAU .((...((((............))))...))...............(((((.(.(((((....................))))).))))))... (-18.55 = -18.55 + 0.00)
| Location | 18,168,385 – 18,168,478 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 97.87 |
| Shannon entropy | 0.02931 |
| G+C content | 0.51956 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -23.50 |
| Energy contribution | -23.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18168385 93 - 23011544 AUUCAGCGGGAUCCAAAUCAGUGUGAA-GGGGCAGUGGAUGCUCGCUGGGGGAAAAGGAAAAUGCGAAAGGGAAAAGAGGAAAACCCUAAGGCG .((((((((((((((..((........-)).....))))).))))))))).............((...((((............))))...)). ( -23.70, z-score = -0.95, R) >droSim1.chr2L 17846240 94 - 22036055 AUUCAGCGGGAUCCAAAUCAGUGUGAAGGGGGCAGUGGAUGCUCGCUGGGGAAGAAGGAAAAUGCGAAAGGGAAAAGAGGAAAACCCUAAGGCG .((((((((((((((..((..(....)..))....))))).))))))))).............((...((((............))))...)). ( -24.00, z-score = -1.03, R) >droSec1.super_7 1793737 94 - 3727775 AUUCAGCGGGAUCCAAAUCAGUGUGAAGGGGGCAGUGGAUGCUCGCUGGGGGAAAAGGAAAAUGCGAAAGGGAAAAGAGGAAAACCCUAAGGCG .((((((((((((((..((..(....)..))....))))).))))))))).............((...((((............))))...)). ( -24.00, z-score = -1.03, R) >consensus AUUCAGCGGGAUCCAAAUCAGUGUGAAGGGGGCAGUGGAUGCUCGCUGGGGGAAAAGGAAAAUGCGAAAGGGAAAAGAGGAAAACCCUAAGGCG .((((((((((((((.....((.(.....).))..))))).))))))))).............((...((((............))))...)). (-23.50 = -23.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:28 2011