| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,764,647 – 1,764,738 |
| Length | 91 |
| Max. P | 0.883307 |
| Location | 1,764,647 – 1,764,738 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 88.50 |
| Shannon entropy | 0.20865 |
| G+C content | 0.46589 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -17.44 |
| Energy contribution | -18.40 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1764647 91 - 23011544 CCAAUUAAGUGAAAGCUUGACAGGAAACGGAUUUCCCGGGAAACAUGGAAAAUGGGAAAGAGGGUGGGAGCAGUGGGCUCACAUAUCGAUU ((..((((((....))))))..(....))).((((((((....).(....).)))))))((..(((.((((.....)))).))).)).... ( -26.20, z-score = -2.66, R) >droSim1.chr2L 20233445 90 + 22036055 CCAAUUAAGUGAAAGCUUGACAGGAAACGGAUUUUCCAGGAAACA-GGAAAAUGGGAAAGGGGCUGGGAGCAGUGGGCUCACAUAUCGAUU ((..((((((....))))))..(....)))(((((((.(....).-)))))))((.....(((((.(......).))))).....)).... ( -24.20, z-score = -2.37, R) >droSec1.super_14 1699146 91 - 2068291 CCAAUUAAGUGAAAGCUUGACAGGAAACGGAUUUCCCAGGAAACAGGGAAAAUGGGAAAGGGAAUGGGAGCAGUGGGCUCACAUAUCGAUU (((.((((((....))))))..(....)...((((((.(....).)))))).))).....((.(((.((((.....)))).))).)).... ( -27.40, z-score = -3.55, R) >droYak2.chr2L 1737884 85 - 22324452 CCAAUUAAGUGGAAGCUUGACAGGAAACGGAUUUCCCAGGAAACAGGAAAAAUGGAGGA------AGGAGGAGUGGGCUCACAUAUCGAUU ((..((((((....))))))..(....))).(((((..(....).)))))(((.((...------..(((.......))).....)).))) ( -16.80, z-score = -0.16, R) >droEre2.scaffold_4929 1808922 83 - 26641161 CCAAUUAAGUGAGAGCUUGACAGGAAACGGAUUUCCCAGGAAACAGG-GAAAUGGA-AA------GGGAGGAGUGGGCUCACAUAUCGAUU ........(((((.((((....(....)..(((((((.(....).))-)))))...-..------.....))))...)))))......... ( -24.30, z-score = -2.95, R) >consensus CCAAUUAAGUGAAAGCUUGACAGGAAACGGAUUUCCCAGGAAACAGGGAAAAUGGGAAAG_G__UGGGAGCAGUGGGCUCACAUAUCGAUU (((.((((((....))))))..(....)...((((((.(....).)))))).)))............((((.....))))........... (-17.44 = -18.40 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:05 2011