| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,018,736 – 18,018,790 |
| Length | 54 |
| Max. P | 0.996250 |
| Location | 18,018,736 – 18,018,790 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 92.59 |
| Shannon entropy | 0.10203 |
| G+C content | 0.33457 |
| Mean single sequence MFE | -13.20 |
| Consensus MFE | -14.77 |
| Energy contribution | -14.33 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.79 |
| Structure conservation index | 1.12 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.90 |
| SVM RNA-class probability | 0.996250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18018736 54 - 23011544 CUUUAUAUGUAGCUGUAAGACAUCGCAGUCAGUGAUGCUAAAUGUUGCAUUUUA ......(((((((....((.((((((.....))))))))....))))))).... ( -14.40, z-score = -1.94, R) >droEre2.scaffold_4845 16344541 54 + 22589142 CUUUAUAUGUAGCUGUAAGACAUCGCAGUCAGUGAUGCUAAAUGUUGCAUUUUA ......(((((((....((.((((((.....))))))))....))))))).... ( -14.40, z-score = -1.94, R) >droYak2.chr2R 18067648 50 + 21139217 CUUUAUAUGUAGCUGUAAGACAUCACA----GUGAUGCUAAAUGUUACAUUUUA ......(((((((....((.((((...----..))))))....))))))).... ( -10.80, z-score = -1.50, R) >consensus CUUUAUAUGUAGCUGUAAGACAUCGCAGUCAGUGAUGCUAAAUGUUGCAUUUUA ......(((((((....((.((((((.....))))))))....))))))).... (-14.77 = -14.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:13 2011