| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,961,666 – 17,961,786 |
| Length | 120 |
| Max. P | 0.972213 |
| Location | 17,961,666 – 17,961,786 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 74.90 |
| Shannon entropy | 0.48372 |
| G+C content | 0.39366 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -18.67 |
| Energy contribution | -19.65 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.972213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17961666 120 + 23011544 CAGCAUUGCGGCGGGUGAAAUAGUUUAAGGGCCUCAUUAAUGUGGUUGCGGCUUGGGAAUAUUUUGGAAAUUGAU-CUUUAUGUAGCCUAAAUGCAUAAGAAGGAGGUCUUUAAACUGUUC ..((......))......(((((((((((((((((...........((((..(((((.((((...(((......)-))..))))..))))).)))).......))))))))))))))))). ( -33.57, z-score = -1.87, R) >droEre2.scaffold_4845 16284407 120 - 22589142 CAACAUUGCGGUGGGUGAAAUAGUUUAAGGGCCUCAUUAAUGUGGUUGCGGCCUGCGCAUAUUUUGGAAAUUUGU-CCUUCUGAAGGGGUUGUACAUAAAAAGGAGGUCUUUAAACUAUUC ...((((......)))).(((((((((((((((((.....((((..((((((((.......(((..(((......-..)))..))))))))))))))).....))))))))))))))))). ( -36.51, z-score = -2.71, R) >droYak2.chr2R 18004534 120 - 21139217 CAACAUUGCGGCGGGUGAAAUAGUUUAAGGGCCUCAUUAAUGUGGUUGCGGCUUGCGAGUAUUUUGCCAAUUUGU-CCUUAUGAAAGGAAAGUACAUAGGAAGGAGGUUUUUAAACUGUUC ...((((......)))).(((((((((((((((((.((..((((..((((((.............)))......(-((((....)))))..)))))))..)).))))))))))))))))). ( -33.22, z-score = -1.65, R) >droSec1.super_7 1596524 120 + 3727775 CAACAUUGCGGCGGGUGAAAUAGUUUAAGGGCCUCAUUAAUGUGGUUGCGGCUUGCGAAUAUUUUGGAAAUCGGU-CUUUAUGUAGCCGAAAUGCAUAAGAAGGAGGUCUCUAAACUGUUC ...((((......)))).(((((((((..((((((.((..(((((((.(((((.....((((...(((......)-))..))))))))).))).))))..)).))))))..))))))))). ( -32.00, z-score = -1.09, R) >droSim1.chr2L 17640118 120 + 22036055 CAAAAUUGCGGCGGGUGAAAUAGUUUAAGGGCCUCAUUAAUGUGGUUUCGGCUUGCGAAUAUUUUGGAAAUCGGU-CUUUAUGUAGCCGAAAUGCAUAAGAAGGAGGUCUCUAAACUGUUC .....(..(.....)..)(((((((((..((((((.((..(((((((((((((.....((((...(((......)-))..))))))))))))).))))..)).))))))..))))))))). ( -36.40, z-score = -2.94, R) >droGri2.scaffold_15252 14458234 111 + 17193109 CAUAACUAAGCCCCGAGUGAUAGUUUAAUAGAGUUUAUAGAACGGUU---GUUUAAUUAAAUCAUAGAUAUAUAUGCAAUAUAUAGG-AAACUAUACUUUAAA-----CUUUCAAUUGGU- ............((((.(((.(((((((.((.((.((((.....((.---((((....)))).)).....)))).))....(((((.-...))))))))))))-----)).))).)))).- ( -21.10, z-score = -1.65, R) >consensus CAACAUUGCGGCGGGUGAAAUAGUUUAAGGGCCUCAUUAAUGUGGUUGCGGCUUGCGAAUAUUUUGGAAAUUGGU_CUUUAUGUAGCCGAAAUACAUAAGAAGGAGGUCUUUAAACUGUUC ..................(((((((((((((((((........(((....)))........................((((((((.......))))))))...))))))))))))))))). (-18.67 = -19.65 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:07 2011