| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,940,959 – 17,941,064 |
| Length | 105 |
| Max. P | 0.575925 |
| Location | 17,940,959 – 17,941,064 |
|---|---|
| Length | 105 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 87.27 |
| Shannon entropy | 0.23036 |
| G+C content | 0.41552 |
| Mean single sequence MFE | -18.41 |
| Consensus MFE | -13.32 |
| Energy contribution | -13.54 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17940959 105 + 23011544 UCACCCACACACAAUCGCAUUCACCCCGCUUACACACAAAGAGCGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGG--AAAGCGACAACGACAG- ..............((((.(((.((..((((.........))))(((((.((((.((((...)))).))))..)))))........)))--)).)))).........- ( -18.90, z-score = -1.66, R) >dp4.chr4_group3 1234708 90 - 11692001 --------------UCGCACACACU-CGCACACACACAAA--ACGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGGGGAAGGCGACAACGAGAA- --------------((((.....((-(.((..........--(((((((.((((.((((...)))).))))..))))))).....)).)))...)))).........- ( -15.46, z-score = -1.08, R) >droAna3.scaffold_12916 13225603 88 - 16180835 --------------ACACACUCACUCUGUUGCCCCACAA----CGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGG--AAAGCGACAACGACAGC --------------............(((((((((((.(----((((((.((((.((((...)))).))))..))))))).)...))))--...))))))........ ( -20.40, z-score = -2.16, R) >droEre2.scaffold_4845 16265748 91 - 22589142 --------------UCGCAUUCAACACGCUUACACACAAAGAGCGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGG--AAAGCGACAACGACAG- --------------((((.(((.....((((.........))))(((((.((((.((((...)))).))))..)))))..........)--)).)))).........- ( -16.70, z-score = -1.55, R) >droYak2.chr2R 17980024 91 - 21139217 --------------UCGCAUUCACCACGCUUACACACAAAGAGCGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGG--AAAGCGACAACGACAG- --------------((((.(((.(((.((((.........))))(((((.((((.((((...)))).))))..))))).......))))--)).)))).........- ( -20.20, z-score = -2.70, R) >droSec1.super_7 1577106 91 + 3727775 --------------UCGCAUUCACCCCGCUUACACACAAAGAGCGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGG--AAAGCGACAACGACAG- --------------((((.(((.((..((((.........))))(((((.((((.((((...)))).))))..)))))........)))--)).)))).........- ( -18.60, z-score = -1.77, R) >droSim1.chr2L 17620140 91 + 22036055 --------------UCGCAUUCACCCCGCUUACACACAAAGAGCGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGG--AAAGCGACAACGACAG- --------------((((.(((.((..((((.........))))(((((.((((.((((...)))).))))..)))))........)))--)).)))).........- ( -18.60, z-score = -1.77, R) >consensus ______________UCGCAUUCACCCCGCUUACACACAAAGAGCGUUUAGUAUGGAAAUUAAAUUUGCAUAAAUAAACGUCGACAUGGG__AAAGCGACAACGACAG_ ..........................(((((.....((....(((((((.((((.((((...)))).))))..))))))).....)).....)))))........... (-13.32 = -13.54 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:05 2011