| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,919,736 – 17,919,828 |
| Length | 92 |
| Max. P | 0.986673 |
| Location | 17,919,736 – 17,919,828 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 80.04 |
| Shannon entropy | 0.37797 |
| G+C content | 0.34241 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -13.56 |
| Energy contribution | -14.07 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.25 |
| SVM RNA-class probability | 0.986673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17919736 92 - 23011544 UUUUCUCGUGCUAUUUUUAGUGUUAUUUUUUAUGACAGAACGAGAAUGGAACAAUUAUUUCUGCAGCUGAAAGUUUUUGUGCAC-CACGCAUG ..(((((((((((....))))(((((.....)))))...)))))))(((.((((...((((.......))))....))))...)-))...... ( -19.50, z-score = -1.07, R) >droEre2.scaffold_4845 16244231 89 + 22589142 UUUUCUCGUGCUAUUUUUAGUGUUAUUUUUUAUGACAGAAUGAGAAUGGCACAAUUAUUUGUGGUGCUGCAAGUUUUUGUGCCCGCACA---- .......((((.(((((((.((((((.....))))))...)))))))(((((((..((((((......))))))..))))))).)))).---- ( -29.90, z-score = -4.42, R) >droYak2.chr2R 17958535 88 + 21139217 UUUUCUCGUGCUAUUUUUAGUGUUAUUUUUUAUGACAGAAAGAGAAUGGCACAAUUAUUUGUGGUGCUGAAAGUUUUUGUGCAC-CAUA---- .......(((((((((((..((((((.....))))))....))))))))))).......((((((((.............))))-))))---- ( -26.92, z-score = -4.15, R) >droSec1.super_7 1556320 92 - 3727775 UUUUCUCUUGCUAUUUUUAGUGUUAUUUUUUAUGACAGAACGAGAAUGGCACAAUUAUUUUUGCAGCUGAAAGUUUUUGUGCAC-CACACUUG ..(((((..((((....))))(((((.....))))).....)))))..((((((..((((((......))))))..))))))..-........ ( -21.30, z-score = -2.39, R) >droSim1.chr2L 17581525 92 - 22036055 UUUUCUCGUGCUAUUUUUAGUGUUAUUUUUUAUGACAGAACGAGAAUGGCACAAUUAUUUUUGCAGCUGAAAGUUUUUGUGCAC-CACACUUG ..(((((((((((....))))(((((.....)))))...)))))))..((((((..((((((......))))))..))))))..-........ ( -24.90, z-score = -3.37, R) >droAna3.scaffold_12916 13205325 82 + 16180835 -UUUGUUGUUUUGUUUCGCUUUUUUUAUGGCUGAGAAUAGCGGGAAUGGCACAAUUAUUUUUGUUGCUCCAACUUCUU-UGCAC--------- -...((((.....(..((((.((((((....)))))).))))..)..(((((((......))).)))).)))).....-.....--------- ( -17.40, z-score = -1.17, R) >consensus UUUUCUCGUGCUAUUUUUAGUGUUAUUUUUUAUGACAGAACGAGAAUGGCACAAUUAUUUUUGCAGCUGAAAGUUUUUGUGCAC_CACA____ ..(((((((((((....))))(((((.....)))))...)))))))..((((((..((((..........))))..))))))........... (-13.56 = -14.07 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:03 2011