| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,909,945 – 17,910,060 |
| Length | 115 |
| Max. P | 0.518775 |
| Location | 17,909,945 – 17,910,060 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.22 |
| Shannon entropy | 0.53132 |
| G+C content | 0.44400 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -15.35 |
| Energy contribution | -17.30 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17909945 115 + 23011544 CGUCAGACACCGGAUGUUUGCUCUGUUUUCUCGGAAAAGUGAGUUUUUGUUCCAAGAGCUCCACGCAUA----UGUGCGUUUGCAGUUGAUUUUCCGGAGAGCCAAAAAUUUGACUACU .((((((....(((.(....))))((((((.((((((((.(((((((((...))))))))))(((((..----..)))))..........)))))))))))))......)))))).... ( -33.40, z-score = -1.71, R) >droEre2.scaffold_4845 16236806 114 - 22589142 CGUCAGACACCGGAUGUUUGCUCUGUUUUCUCGGAAAAGUGAGUUUUUGUUCCCAGAACUGCACGCAUA----UGUGCGUUUGCAGUUGAUUUCCCGGAUAACCAAAA-UUUGACUACU .((((((....(((.....((((..((((....))))...))))......)))...(((((((((((..----..)))))..))))))........((....))....-)))))).... ( -28.00, z-score = -0.71, R) >droYak2.chr2R 17950815 119 - 21139217 CGUCAGACACAGGAUGUUUGCUCUGUUUUCUUCGAAAAGUGAGUUUCUGUUCCAAGAACUCCACGCAUACAUAUGUUCGUUUGCAGUUGAUUUCCCGCAGAACCAAAGAUUUGACUACA .((((((((((..((((.(((....(((((...)))))(((((((.((......)))))).)))))).)))).)))...(((((.(........).)))))......).)))))).... ( -23.90, z-score = 0.41, R) >droSec1.super_7 1548707 115 + 3727775 CGUCAGACACCGGAUGUUUGCUCUGUUUUCUCGGAAAAGUGAGUUUUUGUUCCAAGAGCUCCACGCAUA----UGUGCGUUUGCAGUUGAUUUUUCGGAGAGCCAAAAAUUUGACUACU .((((((...((((.(....)))))..(((((.((((((((((((((((...))))))))).(((((..----..))))).........))))))).))))).......)))))).... ( -32.30, z-score = -1.34, R) >droSim1.chr2L 17573915 115 + 22036055 CGUCAGACACCGGAUGUUUGCUCUGUUUUCUCGGAAAAGUGAGUUUUUGUUCCAAGAGCUCCACGCAUA----UGUGCGUUUGCAGUUGAUUUUCCGGAGAGCCAAAAAUUUGACUACU .((((((....(((.(....))))((((((.((((((((.(((((((((...))))))))))(((((..----..)))))..........)))))))))))))......)))))).... ( -33.40, z-score = -1.71, R) >droGri2.scaffold_15252 14386817 91 + 17193109 CGCCGACCACCAAAUGG--GGUAUGAGUGCUUCAGCGGACAGCUUGUCA-------GGCUGUACUUGUUGAUGGGUAUUCACACAUUUAAUUUGUCUGUC------------------- ....(((...(((((..--.((.((((((((((((((.((((((.....-------))))))...))))))..)))))))).)).....)))))...)))------------------- ( -27.80, z-score = -1.20, R) >consensus CGUCAGACACCGGAUGUUUGCUCUGUUUUCUCGGAAAAGUGAGUUUUUGUUCCAAGAGCUCCACGCAUA____UGUGCGUUUGCAGUUGAUUUUCCGGAGAGCCAAAAAUUUGACUACU ...((((((.....))))))....(((((((.(((((...(((((((((...))))))))).(((((((....)))))))..........))))).)))))))................ (-15.35 = -17.30 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:02 2011