| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,896,287 – 17,896,347 |
| Length | 60 |
| Max. P | 0.566617 |
| Location | 17,896,287 – 17,896,347 |
|---|---|
| Length | 60 |
| Sequences | 7 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 68.48 |
| Shannon entropy | 0.62329 |
| G+C content | 0.37341 |
| Mean single sequence MFE | -10.53 |
| Consensus MFE | -5.51 |
| Energy contribution | -4.60 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 2.14 |
| Mean z-score | -0.65 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566617 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 17896287 60 + 23011544 UAGCUAUGGCUGAAUGGCCAAG-AUGCUAGAAGGCAGAAUAUAAACAAA--AAACUAAAAUAA ((((..(((((....)))))..-..))))....................--............ ( -10.10, z-score = -1.30, R) >droSim1.chr2L 17560005 60 + 22036055 UAGCUAUGGCUCAGUGGCCAAG-AUGCUAGAAGGCAGAAUAUAAACAAA--AAACUAAAAUAA ((((..(((((....)))))..-..))))....................--............ ( -9.40, z-score = -0.42, R) >droSec1.super_7 1534865 60 + 3727775 UAGCUAUGGCUCAAUGGCCAAG-AUGCUAGAAGGCAGAAUAUAAACAAA--AAACUGAAAUAA ((((..(((((....)))))..-..))))....................--............ ( -9.40, z-score = -0.67, R) >droYak2.chr2R 17936770 60 - 21139217 UAACUAUGGCUCGAUAGCCAAU-GUGCUAGAAGGCAGGAUGUAAACAAA--AAACUAAAAUAA ......(((((....))))).(-.((((....)))).)...........--............ ( -9.40, z-score = -0.86, R) >droEre2.scaffold_4845 16222986 60 - 22589142 UAACUGUGGCCCAAUGGCCAAG-AGGCUGGCAGGCAGGAUAUAAACAAA--AAACUAAACUUA ...((((.(((....((((...-.)))))))..))))............--............ ( -14.20, z-score = -0.71, R) >droAna3.scaffold_12916 13185366 62 - 16180835 CAAAUGUGGUUCAAUAGUGAAGGAUAUGAGCCAGGAGUAUGAUGGCAGUUUAAAUGUAACUA- ....(.(((((((.((........))))))))).)...........((((.......)))).- ( -8.70, z-score = 0.11, R) >droMoj3.scaffold_6500 21940851 61 + 32352404 UACAGUUUGCUGCAUAGCCAUA-A-GCUGCAAGGUGGACCAUGAAAUGAGUAGACGAAAGUAA ....(((((((.((((((....-.-))).((.((....)).))..))))))))))........ ( -12.50, z-score = -0.67, R) >consensus UAACUAUGGCUCAAUGGCCAAG_AUGCUAGAAGGCAGAAUAUAAACAAA__AAACUAAAAUAA ........(((...((((.......))))...)))............................ ( -5.51 = -4.60 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:49:01 2011