| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,884,349 – 17,884,428 |
| Length | 79 |
| Max. P | 0.922672 |
| Location | 17,884,349 – 17,884,428 |
|---|---|
| Length | 79 |
| Sequences | 4 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 93.88 |
| Shannon entropy | 0.09720 |
| G+C content | 0.38291 |
| Mean single sequence MFE | -20.12 |
| Consensus MFE | -16.26 |
| Energy contribution | -16.32 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17884349 79 + 23011544 UCAAACAUACGUGUGUGUAAAACACGUCCUCACUAGUGUGUAUUGGUGAGGAAGUAAAUGUUCCUUGCUUCUUAAUUAA ...(((((.(((((.......)))))(((((((((((....))))))))))).....)))))................. ( -22.30, z-score = -3.48, R) >droSim1.chr2L 17553166 79 + 22036055 CCCAACAUACGUGUGUGUAAAACACGUCCCCACUAGUGUGUAUUGGUGAGGAAGUAAAUGUUCCUUGCUUCUUAAUUAA ........((((((.......))))))...(((((((....)))))))(((((((((.......)))))))))...... ( -19.50, z-score = -2.26, R) >droSec1.super_7 1522991 79 + 3727775 CCCAACAUACGUGUGUGUAAAACACGUACCCACUAGUGUGUAUUGGUGAGGAAGUAAAUGUUCCUUGCUUCUUAAUUAA .......(((((((.......)))))))..(((((((....)))))))(((((((((.......)))))))))...... ( -21.30, z-score = -2.56, R) >droYak2.chr2R 17922249 79 - 21139217 UCCAACAUACGCGUGUAUAAAACACGUCCUCAACAGUGUGUAUUGGUGAGGAAGUAAAUGUUCCUUUCUUCUUAAUUAA .((((.((((((((((.....))))((.....)).)))))).)))).((((((.......))))))............. ( -17.40, z-score = -2.03, R) >consensus CCCAACAUACGUGUGUGUAAAACACGUCCCCACUAGUGUGUAUUGGUGAGGAAGUAAAUGUUCCUUGCUUCUUAAUUAA ....((((((.(((((.....))))).........)))))).(((((.(((((((((.......))))))))).))))) (-16.26 = -16.32 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:56 2011