| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,879,703 – 17,879,802 |
| Length | 99 |
| Max. P | 0.659961 |
| Location | 17,879,703 – 17,879,802 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 57.72 |
| Shannon entropy | 0.76128 |
| G+C content | 0.35502 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -5.70 |
| Energy contribution | -4.90 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17879703 99 - 23011544 ----------AAAUGAGAAAAUUGAAU-GAAGUGUAAGAAAUGCUGACAAACUUUGGUACUUUUCAAAUUGGUACAAAAAUUGGUGGAAAUCAAAAACUCGUUAGC-ACAU ----------.................-.............(((((((........(((((.........))))).....(((((....)))))......))))))-)... ( -17.50, z-score = -1.07, R) >dp4.chr4_group3 1172355 92 + 11692001 ---AUUCUGCUUGUGGAAGUGUCUCUUUGAAGCCCGAGCAACGCUUAUUGA-------AGUUCCUGAAGUUUCGCAGGAACAUUUCUGCAUGCAAUUUCCAU--------- ---....(((.((..(((((((..((.((((((..((((..((.....)).-------.)))).....)))))).))..)))))))..)).)))........--------- ( -27.50, z-score = -2.15, R) >droSim1.chr2L 17548093 104 - 22036055 UGCGUUCCGCAAAUGAGAAAAUAGAA------AGUAAGAAAUGCUGACAAGCUUUGGUACUUUUGGAAUUGGUACAAAAACU-GUGGAAAUCAAAAACUCGUUUAUAACAU .(((...)))(((((((......(((------((((..(((.(((....))))))..))))))).((.((..((((.....)-)))..)))).....)))))))....... ( -19.60, z-score = -1.00, R) >droSec1.super_7 1518078 104 - 3727775 UGCGUUCCGCAAAUGAGAAUAUAGAA------AGUAAGAAAUGCUUACAAGCUUUGGUACUUUUGGAAUUUGUACAGAAACU-GUGGAAAUCAAAAACUCGUUUAUAACAU .(((...)))(((((((......(((------((((..(((.(((....))))))..))))))).((.(((.(((((...))-))).))))).....)))))))....... ( -22.30, z-score = -1.83, R) >droEre2.scaffold_4845 16206339 107 + 22589142 UGCUUUCUGCAAAUGAGAUUAUCGAGUCGAAUGGUAGGAAAUGCUUACACAUUCUG----CUUUCGAAUUAUUAAAAGAAACUGUGGGACUCAAUAACUCGUUCAGAGCAU (((..((((..((((((.((((.(((((((((((((((.....))))).)))))..----((((..(....)..)))).........))))).))))))))))))))))). ( -30.40, z-score = -3.03, R) >consensus UGCGUUCCGCAAAUGAGAAUAUAGAAU_GAA_AGUAAGAAAUGCUUACAAACUUUGGUACUUUUCGAAUUGGUACAAAAACU_GUGGAAAUCAAAAACUCGUUUAUAACAU ...........((((((................(((((.....)))))............((((............)))).................))))))........ ( -5.70 = -4.90 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:55 2011