| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,877,102 – 17,877,186 |
| Length | 84 |
| Max. P | 0.588708 |
| Location | 17,877,102 – 17,877,186 |
|---|---|
| Length | 84 |
| Sequences | 4 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 85.06 |
| Shannon entropy | 0.24245 |
| G+C content | 0.37137 |
| Mean single sequence MFE | -11.45 |
| Consensus MFE | -10.43 |
| Energy contribution | -10.42 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17877102 84 - 23011544 UGCUUUUUCCUGUCUUCCACAUCAUAAACGCCAUUAUCCACGUAGUGGGUAGUGUAGUCUAUUUCCGAUUUGUAUUGUCAUUUU--- ..........((.(...((.((((((.((..((((((((((...))))))))))..)).)))....))).))....).))....--- ( -13.70, z-score = -1.23, R) >droSim1.chr2L 17545479 87 - 22036055 UGCUUUUUCCUGUCUUCCACAUCAUCAACGCCAUUAUCCAAGUAGUGGGUAGUGUAGUCUAUUUCCGAUUUUUAUUGUCAUUUAUUU ...........................((..(((((((((.....)))))))))..))........(((.......)))........ ( -11.00, z-score = -0.73, R) >droSec1.super_7 1515466 87 - 3727775 UGCUUUUUCCUGUCUUCCACAUCAUCAACGCCAUUAUCCAAGUAGUGGGUAGUGUUGUCUAUUUCCGAUUUUUAUUGUCUUUUAUUU ...........................(((.(((((((((.....))))))))).)))........(((.......)))........ ( -11.00, z-score = -0.81, R) >droYak2.chr2R 17913845 74 + 21139217 -------------CUUCCACGUCAUCAACGCCAUUAUCCAAGUAGUGGGUAGUGCAGUCUAUUUCCGAAUUUUAUUGUCAUUCAUUU -------------................((.((((((((.....))))))))))...........((((.........)))).... ( -10.10, z-score = -1.00, R) >consensus UGCUUUUUCCUGUCUUCCACAUCAUCAACGCCAUUAUCCAAGUAGUGGGUAGUGUAGUCUAUUUCCGAUUUUUAUUGUCAUUUAUUU ...........................((..(((((((((.....)))))))))..))............................. (-10.43 = -10.42 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:54 2011