| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,876,023 – 17,876,131 |
| Length | 108 |
| Max. P | 0.564904 |
| Location | 17,876,023 – 17,876,131 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.13 |
| Shannon entropy | 0.39227 |
| G+C content | 0.40703 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -18.46 |
| Energy contribution | -18.85 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.564904 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17876023 108 - 23011544 ----AAAUUAUAUGUUUCUCAGUGCAUUUGUGCACUUGGCUGAAUGUUAUCUGCCAUGCCAAAUGAUGUCAAUGAAUGGUUAGAUGAGGUGUGUUUGUAUGAGUCCCUGUAU ----....((((.(...(((((((((....)))))..(((...((.(((((((((((..((..((....)).)).)))).))))))).))..)))....))))..).)))). ( -23.00, z-score = 0.13, R) >droPer1.super_10707 704 89 + 1018 -------------------GUCUCCCAGCGUGCUCUUGGCUGAAUGUUAUCUACCAUUCCAAAUGAUGUUAAUGAAUGGUUAGAUGAGGUGUGCCUGU----GUCUGUGUAU -------------------......(((.(..(....(((...((.(((((((((((((..............)))))).))))))).))..))).).----.))))..... ( -23.04, z-score = -1.98, R) >droAna3.scaffold_12916 13164006 111 + 16180835 -AACAUCCUAGUUCCCAGUGUAUGGAUGUGUGCACUUGGCUGAAUGUUAUCUACCAUGCCAAAUGAUGUCAAUGAAUGGUUAGAUGAGGUGUGCCUGUAUGCGUCCGUGUGU -................(..((((((((((((((...(((...((.(((((((((((..((..((....)).)).)))).))))))).))..)))))))))))))))))..) ( -36.50, z-score = -2.93, R) >droEre2.scaffold_4845 16202563 111 + 22589142 AACCAAUUUAUGAGUU-CUCAGUGCAUUUGUGCACUUGGCUGAAUGUUAUCUGCCAUGCCAAAUGAUGUCAAUGAAUGGUUAGAUGAGGUGUGCUUGUAUGAGUCCCUGUAU ........(((..(..-(((((((((....)))))..(((...((.(((((((((((..((..((....)).)).)))).))))))).))..)))....))))..)..))). ( -27.50, z-score = -0.61, R) >droYak2.chr2R 17911394 108 + 21139217 ----AAUUUAAAUAGUUCUCAGUGCAUUUCUGCACUUGGCUGAAUGUUAUCUGCCAUGCCAAAUGAUGUCAAUAAAUGGUUAGAUGAGGUGUGCUUGUAUGAGUCCCUGUAU ----.......((((..(((((((((....)))))..(((...((.(((((((((((......((....))....)))).))))))).))..)))....))))...)))).. ( -26.70, z-score = -1.29, R) >droSec1.super_7 1514369 108 - 3727775 ----AAAAUAUAUAUUGCUCAGUGCAUUUGUGCACUUGGCUGAAUGUUAUCUGCCAUACCAAAUGAUGUCACUGAAUGGUUAGAUGAGGUGUGCUUGUAUGAGUCCCUGUAU ----.....(((((..((((((((((....)))))..(((...((.(((((((((((..((..((....)).)).)))).))))))).))..)))....)))))...))))) ( -26.00, z-score = -0.51, R) >consensus ____AAAUUAUAUAUU_CUCAGUGCAUUUGUGCACUUGGCUGAAUGUUAUCUGCCAUGCCAAAUGAUGUCAAUGAAUGGUUAGAUGAGGUGUGCUUGUAUGAGUCCCUGUAU .........................(((((((((...(((...((.(((((((((((......((....))....)))).))))))).))..))))))))))))........ (-18.46 = -18.85 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:53 2011