| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,870,213 – 17,870,324 |
| Length | 111 |
| Max. P | 0.525101 |
| Location | 17,870,213 – 17,870,324 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.62 |
| Shannon entropy | 0.34197 |
| G+C content | 0.39627 |
| Mean single sequence MFE | -23.36 |
| Consensus MFE | -16.28 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17870213 111 - 23011544 AUCAUGAGCAAGAAGUUAGCACAACAAUUUAUAAAAGUAAAUCCAAGGCUUUAAGCUUUAGCAUUUCCAUAGUGAUUCGCUGCAGGACAUUA--UCCUGUAAGCAAUUUGGAC .......((..(((((((((......((((((....)))))).....)))...)))))).))...((((....((((.(((((((((.....--)))))).))))))))))). ( -23.20, z-score = -1.15, R) >droEre2.scaffold_4845 16196854 96 + 22589142 ACCAUGAGAAAGGAGCUCG-------------AAUUACAAUUUUUAGAAGU--AGAAUCAGCAUUUCCAUAGGGACUCGCUGCAGGACAUUA--UCCUGUACGCAAUUUGGAC .(((.(((......(((.(-------------(.((((...........))--))..)))))...(((....))))))(((((((((.....--))))))).))....))).. ( -22.40, z-score = -1.51, R) >droYak2.chr2R 17905386 111 + 21139217 AUAAUGAGAAAUAAGUUCGCAUAACAAUUUAUAAAAGUAAAACCAAGGCUUUAAGCAUUAGCGUCUCCCUAGUGAUUCGCUGCAGGACAUUA--UCCUGUACGCAAUUUGGAC ...(((.(((.....))).)))....................(((((........((((((.(....)))))))....(((((((((.....--))))))).))..))))).. ( -21.60, z-score = -0.73, R) >droSec1.super_7 1508529 103 - 3727775 AUCACGAGCAAGAAGUUCGCAC----------AAAAGUAAAUCCGAGGCUUUAAGCUUUAGCAUUUCCAUAGUGAUUCGCUGCAGGACAUUACAUCCUGUAAGCAAUUUGGAC (((((((((.....))))....----------....(.(((((..((((.....))))..).)))).)...)))))..(((((((((.......)))))).)))......... ( -24.80, z-score = -1.62, R) >droSim1.chr2L_random 708115 103 - 909653 AUCACGAGCAAGAAGUUCGCAC----------AAAAGUAAAUCCGAGGCUUUAAGCUUUAGCAUUUCCAUAGUGAUUCGCUGCAGGACAUUACAUCCUGUAAGCAAUUUGGAC (((((((((.....))))....----------....(.(((((..((((.....))))..).)))).)...)))))..(((((((((.......)))))).)))......... ( -24.80, z-score = -1.62, R) >consensus AUCAUGAGCAAGAAGUUCGCAC__________AAAAGUAAAUCCAAGGCUUUAAGCUUUAGCAUUUCCAUAGUGAUUCGCUGCAGGACAUUA__UCCUGUAAGCAAUUUGGAC ....(((((.....)))))......................((((((.......((....))................(((((((((.......))))))).))..)))))). (-16.28 = -16.60 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:52 2011