| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,754,258 – 1,754,362 |
| Length | 104 |
| Max. P | 0.961255 |
| Location | 1,754,258 – 1,754,362 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 59.67 |
| Shannon entropy | 0.54418 |
| G+C content | 0.55618 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -15.11 |
| Energy contribution | -15.90 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1754258 104 - 23011544 GUCCCAGUUCCAGUACCAAUCCCAACGCAAUCCUAGUCCCAGUCUCAGUCGCAGACUCAGUUUCCGCCGGCUUGCAGACCUCAAGAUGAGGUCACGUAGAGCUG ....((((((..((............((((.((..((......((.((((...)))).)).....)).)).)))).((((((.....))))))))...)))))) ( -26.30, z-score = -2.30, R) >droEre2.scaffold_4929 1798389 87 - 26641161 -----------------AUCCCUAUCCCAAUCCCAGACCCAGUCUCAGUCGCAGACUCAGUUUCCGGCGGCUUGCAGACCUCAAGAUGAGGUCACGUAGAGCUG -----------------......................(((.(((((((((.((.......))..))))))....((((((.....)))))).....)))))) ( -23.30, z-score = -1.06, R) >droAna3.scaffold_12916 349643 84 + 16180835 ------------GUCCCAGUCUGAGAG-----UCGGUCUGAAGACCAGACGCGGAAUUGGACU---AGGAGUUGCAGACCCCGAGAUGAGGUCACGUACAAUUG ------------.(((.((((..(...-----((((((((.....))))).)))..)..))))---.)))......((((.(.....).))))........... ( -26.90, z-score = -1.27, R) >consensus ____________GU_CCAAUCCCAACGCAAUCCCAGUCCCAGUCUCAGUCGCAGACUCAGUUUCCGACGGCUUGCAGACCUCAAGAUGAGGUCACGUAGAGCUG ..................................((((..((((((....).)))))..))))....((((((((.((((((.....))))))..))).))))) (-15.11 = -15.90 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:01 2011