Locus 2308

Sequence ID dm3.chr2L
Location 17,836,746 – 17,836,799
Length 53
Max. P 0.696640
window3182

overview

Window 2

Location 17,836,746 – 17,836,799
Length 53
Sequences 6
Columns 53
Reading direction reverse
Mean pairwise identity 78.84
Shannon entropy 0.41752
G+C content 0.33023
Mean single sequence MFE -5.89
Consensus MFE -3.09
Energy contribution -3.37
Covariance contribution 0.28
Combinations/Pair 1.29
Mean z-score -1.81
Structure conservation index 0.52
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.44
SVM RNA-class probability 0.696640
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 17836746 53 - 23011544
ACAUCUCAACCUUUCGCAAAUUUUAUUUUUCCAUUUUAAUUGCGAGUUUUUUG
............(((((((....................)))))))....... (  -5.15, z-score =  -2.27, R)
>droSim1.chr2L 17514368 53 - 22036055
ACAUCCCAACCUUUCGCAAAUUUUAUUUUGCCGUUUUAAUUGCGAGUUUUUAU
...............(((((......)))))(((.......)))......... (  -5.30, z-score =  -1.44, R)
>droSec1.super_7 1469588 53 - 3727775
ACAUCCCAACCUUUCGCAAAUUUUAUUUUGCCGUUUUAAUUGCGAGUUUUUAG
...............(((((......)))))(((.......)))......... (  -5.30, z-score =  -1.39, R)
>droYak2.chr2R 17871149 51 + 21139217
ACAUACCAACCUCUCGCAAAUUUUAUUUU-CCGUUUUAAUUGCGAGUUUUUG-
......(((...(((((((..........-.........)))))))...)))- (  -7.71, z-score =  -3.38, R)
>droEre2.scaffold_4845 16164017 52 + 22589142
ACACACCAACCUUUCGCAAAUUUUAUUUUGCCGUUUUAAUUGCGAGUUUUUG-
......(((...(((((((....................)))))))...)))- (  -5.45, z-score =  -0.98, R)
>droAna3.scaffold_12916 13126276 53 + 16180835
UCAACUGCGUUUACCGCUCCAAACUUUUUCCACUUUUAAUUGGGAUUUUUUUG
......(((.....)))..((((....(((((........)))))....)))) (  -6.40, z-score =  -1.42, R)
>consensus
ACAUCCCAACCUUUCGCAAAUUUUAUUUUGCCGUUUUAAUUGCGAGUUUUUAG
............(((((((....................)))))))....... ( -3.09 =  -3.37 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:49 2011